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  5. Seita.1G113000.1

Seita.1G113000.1


Description : ligand-gated cation channel *(GLR)


Gene families : OG_42_0000065 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000065_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.1G113000.1
Cluster HCAA Clusters: Cluster_70

Target Alias Description ECC score Gene Family Method Actions
GRMZM2G066489 No alias glutamate receptor 3.3 0.03 Orthogroups_2024-Update
Glyma.01G157900 No alias glutamate receptor 3.6 0.02 Orthogroups_2024-Update
Glyma.09G197400 No alias glutamate receptor 3.3 0.06 Orthogroups_2024-Update
HORVU5Hr1G063500.1 No alias ligand-gated cation channel *(GLR) 0.03 Orthogroups_2024-Update
LOC_Os02g54640 No alias glutamate receptor, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os09g26160 No alias glutamate receptor, putative, expressed 0.02 Orthogroups_2024-Update
PSME_00001292-RA No alias (at4g35290 : 567.0) Encodes a putative glutamate... 0.02 Orthogroups_2024-Update
PSME_00018332-RA No alias (at1g05200 : 548.0) member of Putative ligand-gated ion... 0.02 Orthogroups_2024-Update
Potri.001G374600 No alias glutamate receptor 2.7 0.02 Orthogroups_2024-Update
Sopen06g022630 No alias Receptor family ligand binding region 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0015276 ligand-gated ion channel activity IEA 16Dec
CC GO:0016020 membrane IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003774 motor activity IEP Predicted GO
MF GO:0003777 microtubule motor activity IEP Predicted GO
MF GO:0004357 glutamate-cysteine ligase activity IEP Predicted GO
MF GO:0004363 glutathione synthase activity IEP Predicted GO
BP GO:0006575 cellular modified amino acid metabolic process IEP Predicted GO
BP GO:0006749 glutathione metabolic process IEP Predicted GO
BP GO:0006750 glutathione biosynthetic process IEP Predicted GO
BP GO:0006790 sulfur compound metabolic process IEP Predicted GO
BP GO:0006928 movement of cell or subcellular component IEP Predicted GO
BP GO:0007017 microtubule-based process IEP Predicted GO
BP GO:0007018 microtubule-based movement IEP Predicted GO
MF GO:0008017 microtubule binding IEP Predicted GO
MF GO:0015298 solute:cation antiporter activity IEP Predicted GO
MF GO:0015299 solute:proton antiporter activity IEP Predicted GO
MF GO:0015631 tubulin binding IEP Predicted GO
MF GO:0016787 hydrolase activity IEP Predicted GO
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Predicted GO
MF GO:0016874 ligase activity IEP Predicted GO
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Predicted GO
MF GO:0016881 acid-amino acid ligase activity IEP Predicted GO
BP GO:0019184 nonribosomal peptide biosynthetic process IEP Predicted GO
BP GO:0042398 cellular modified amino acid biosynthetic process IEP Predicted GO
BP GO:0044272 sulfur compound biosynthetic process IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001320 Iontro_rcpt 812 844
IPR001828 ANF_lig-bd_rcpt 49 406
IPR001638 Solute-binding_3/MltF_N 479 811
No external refs found!