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Description : plastidial RNA splicing factor *(HPE1)
Gene families : OG_42_0008680 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0008680_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Setaria italica: Seita.1G129500.1 | |
| Cluster | HCAA Clusters: Cluster_186 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| 442087 | No alias | RNA-binding (RRM/RBD/RNP motifs) family protein | 0.02 | Orthogroups_2024-Update | |
| Bradi3g10760 | No alias | RNA-binding (RRM/RBD/RNP motifs) family protein | 0.03 | Orthogroups_2024-Update | |
| HORVU7Hr1G045830.2 | No alias | plastidial RNA splicing factor *(HPE1) | 0.03 | Orthogroups_2024-Update | |
| Pp1s111_146V6 | No alias | conserved hypothetical protein [Ricinus communis] | 0.02 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000041 | transition metal ion transport | IEP | Predicted GO |
| MF | GO:0000049 | tRNA binding | IEP | Predicted GO |
| MF | GO:0002161 | aminoacyl-tRNA editing activity | IEP | Predicted GO |
| MF | GO:0004175 | endopeptidase activity | IEP | Predicted GO |
| MF | GO:0004177 | aminopeptidase activity | IEP | Predicted GO |
| MF | GO:0004784 | superoxide dismutase activity | IEP | Predicted GO |
| MF | GO:0004812 | aminoacyl-tRNA ligase activity | IEP | Predicted GO |
| MF | GO:0004853 | uroporphyrinogen decarboxylase activity | IEP | Predicted GO |
| MF | GO:0005381 | iron ion transmembrane transporter activity | IEP | Predicted GO |
| CC | GO:0005778 | peroxisomal membrane | IEP | Predicted GO |
| BP | GO:0006298 | mismatch repair | IEP | Predicted GO |
| BP | GO:0006399 | tRNA metabolic process | IEP | Predicted GO |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Predicted GO |
| BP | GO:0006778 | porphyrin-containing compound metabolic process | IEP | Predicted GO |
| BP | GO:0006779 | porphyrin-containing compound biosynthetic process | IEP | Predicted GO |
| BP | GO:0006801 | superoxide metabolic process | IEP | Predicted GO |
| BP | GO:0006826 | iron ion transport | IEP | Predicted GO |
| CC | GO:0009521 | photosystem | IEP | Predicted GO |
| CC | GO:0009523 | photosystem II | IEP | Predicted GO |
| BP | GO:0010206 | photosystem II repair | IEP | Predicted GO |
| BP | GO:0010207 | photosystem II assembly | IEP | Predicted GO |
| BP | GO:0010257 | NADH dehydrogenase complex assembly | IEP | Predicted GO |
| BP | GO:0010258 | NADH dehydrogenase complex (plastoquinone) assembly | IEP | Predicted GO |
| CC | GO:0016020 | membrane | IEP | Predicted GO |
| BP | GO:0016070 | RNA metabolic process | IEP | Predicted GO |
| BP | GO:0016559 | peroxisome fission | IEP | Predicted GO |
| MF | GO:0016703 | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases) | IEP | Predicted GO |
| MF | GO:0016721 | oxidoreductase activity, acting on superoxide radicals as acceptor | IEP | Predicted GO |
| MF | GO:0016874 | ligase activity | IEP | Predicted GO |
| MF | GO:0016875 | ligase activity, forming carbon-oxygen bonds | IEP | Predicted GO |
| MF | GO:0016884 | carbon-nitrogen ligase activity, with glutamine as amido-N-donor | IEP | Predicted GO |
| MF | GO:0018580 | nitronate monooxygenase activity | IEP | Predicted GO |
| BP | GO:0022607 | cellular component assembly | IEP | Predicted GO |
| BP | GO:0030091 | protein repair | IEP | Predicted GO |
| MF | GO:0030983 | mismatched DNA binding | IEP | Predicted GO |
| CC | GO:0031903 | microbody membrane | IEP | Predicted GO |
| BP | GO:0034622 | cellular protein-containing complex assembly | IEP | Predicted GO |
| BP | GO:0034660 | ncRNA metabolic process | IEP | Predicted GO |
| BP | GO:0034755 | iron ion transmembrane transport | IEP | Predicted GO |
| CC | GO:0042579 | microbody | IEP | Predicted GO |
| BP | GO:0043038 | amino acid activation | IEP | Predicted GO |
| BP | GO:0043039 | tRNA aminoacylation | IEP | Predicted GO |
| BP | GO:0043933 | protein-containing complex subunit organization | IEP | Predicted GO |
| CC | GO:0044436 | thylakoid part | IEP | Predicted GO |
| CC | GO:0044438 | microbody part | IEP | Predicted GO |
| CC | GO:0044439 | peroxisomal part | IEP | Predicted GO |
| MF | GO:0046422 | violaxanthin de-epoxidase activity | IEP | Predicted GO |
| BP | GO:0046483 | heterocycle metabolic process | IEP | Predicted GO |
| MF | GO:0046915 | transition metal ion transmembrane transporter activity | IEP | Predicted GO |
| BP | GO:0048285 | organelle fission | IEP | Predicted GO |
| BP | GO:0065003 | protein-containing complex assembly | IEP | Predicted GO |
| MF | GO:0070011 | peptidase activity, acting on L-amino acid peptides | IEP | Predicted GO |
| BP | GO:0071586 | CAAX-box protein processing | IEP | Predicted GO |
| BP | GO:0072593 | reactive oxygen species metabolic process | IEP | Predicted GO |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Predicted GO |
| CC | GO:0098805 | whole membrane | IEP | Predicted GO |
| MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | Predicted GO |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Predicted GO |
| MF | GO:2001070 | starch binding | IEP | Predicted GO |
No InterPro domains available for this sequence
| No external refs found! |