1. Home
  2. Species
  3. Setaria italica
  4. Sequence
  5. Seita.1G160500.1

Seita.1G160500.1


Description : component *(eS27) of small ribosomal-subunit (SSU) proteome


Gene families : OG_42_0001909 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001909_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.1G160500.1
Cluster HCAA Clusters: Cluster_37

Target Alias Description ECC score Gene Family Method Actions
163947 No alias ribosomal protein S27 0.03 Orthogroups_2024-Update
A4A49_15619 No alias 40s ribosomal protein s27-2 0.19 Orthogroups_2024-Update
At2g45710 No alias 40S ribosomal protein S27-1... 0.04 Orthogroups_2024-Update
At5g47930 No alias 40S ribosomal protein S27-3... 0.05 Orthogroups_2024-Update
Bradi3g43475 No alias ribosomal protein S27 0.09 Orthogroups_2024-Update
Bradi5g08453 No alias ribosomal protein S27 0.14 Orthogroups_2024-Update
Brara.B03416.1 No alias component *(eS27) of small ribosomal-subunit (SSU) proteome 0.17 Orthogroups_2024-Update
Brara.F03041.1 No alias component *(eS27) of small ribosomal-subunit (SSU) proteome 0.16 Orthogroups_2024-Update
Brara.G01908.1 No alias component *(eS27) of small ribosomal-subunit (SSU) proteome 0.12 Orthogroups_2024-Update
Brara.I00365.1 No alias component *(eS27) of small ribosomal-subunit (SSU) proteome 0.07 Orthogroups_2024-Update
Brara.I04203.1 No alias component *(eS27) of small ribosomal-subunit (SSU) proteome 0.24 Orthogroups_2024-Update
Cre12.g529400 No alias ribosomal protein S27 0.23 Orthogroups_2024-Update
GRMZM2G066222 No alias ribosomal protein S27 0.06 Orthogroups_2024-Update
Glyma.02G067400 No alias ribosomal protein S27 0.03 Orthogroups_2024-Update
Glyma.16G046500 No alias ribosomal protein S27 0.1 Orthogroups_2024-Update
Glyma.19G105700 No alias ribosomal protein S27 0.07 Orthogroups_2024-Update
HORVU4Hr1G014130.1 No alias component *(eS27) of small ribosomal-subunit (SSU) proteome 0.07 Orthogroups_2024-Update
HORVU4Hr1G074270.1 No alias component *(eS27) of small ribosomal-subunit (SSU) proteome 0.08 Orthogroups_2024-Update
HORVU7Hr1G112740.4 No alias component *(eS27) of small ribosomal-subunit (SSU) proteome 0.07 Orthogroups_2024-Update
Kfl00069_0120 kfl00069_0120_v1.1 (at3g61110 : 161.0) Arabidopsis ribosomal protein;... 0.01 Orthogroups_2024-Update
LOC_Os04g27860 No alias 40S ribosomal protein S27, putative, expressed 0.04 Orthogroups_2024-Update
LOC_Os04g32710 No alias 40S ribosomal protein S27, putative, expressed 0.07 Orthogroups_2024-Update
MA_87055g0010 No alias (at3g61110 : 146.0) Arabidopsis ribosomal protein;... 0.06 Orthogroups_2024-Update
PSME_00029823-RA No alias (at3g61110 : 146.0) Arabidopsis ribosomal protein;... 0.1 Orthogroups_2024-Update
Potri.003G161200 No alias ribosomal protein S27 0.09 Orthogroups_2024-Update
Pp1s165_39V6 No alias 40s ribosomal protein 0.22 Orthogroups_2024-Update
Pp1s17_304V6 No alias 40s ribosomal protein 0.06 Orthogroups_2024-Update
Pp1s63_161V6 No alias 40s ribosomal protein 0.16 Orthogroups_2024-Update
Pp1s92_45V6 No alias 40s ribosomal protein 0.03 Orthogroups_2024-Update
Sobic.001G091801.1 No alias component *(eS27) of small ribosomal-subunit (SSU) proteome 0.27 Orthogroups_2024-Update
Sobic.004G145801.1 No alias component *(eS27) of small ribosomal-subunit (SSU) proteome 0.22 Orthogroups_2024-Update
Solyc01g008090 No alias 40S ribosomal protein S27 (AHRD V3.3 *-* M0TJU4_MUSAM) 0.25 Orthogroups_2024-Update
Sopen01g003640 No alias Ribosomal protein S27 0.23 Orthogroups_2024-Update
evm.model.tig00001299.2 No alias (at5g47930 : 145.0) Zinc-binding ribosomal protein... 0.13 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA 16Dec
CC GO:0005840 ribosome IEA 16Dec
BP GO:0006412 translation IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003746 translation elongation factor activity IEP Predicted GO
CC GO:0005742 mitochondrial outer membrane translocase complex IEP Predicted GO
BP GO:0006414 translational elongation IEP Predicted GO
BP GO:0006839 mitochondrial transport IEP Predicted GO
MF GO:0008097 5S rRNA binding IEP Predicted GO
CC GO:0015934 large ribosomal subunit IEP Predicted GO
BP GO:0017038 protein import IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
BP GO:0030150 protein import into mitochondrial matrix IEP Predicted GO
BP GO:0033365 protein localization to organelle IEP Predicted GO
BP GO:0034613 cellular protein localization IEP Predicted GO
CC GO:0044391 ribosomal subunit IEP Predicted GO
CC GO:0044455 mitochondrial membrane part IEP Predicted GO
BP GO:0044743 protein transmembrane import into intracellular organelle IEP Predicted GO
BP GO:0065002 intracellular protein transmembrane transport IEP Predicted GO
BP GO:0070585 protein localization to mitochondrion IEP Predicted GO
BP GO:0070727 cellular macromolecule localization IEP Predicted GO
BP GO:0071806 protein transmembrane transport IEP Predicted GO
BP GO:0072594 establishment of protein localization to organelle IEP Predicted GO
BP GO:0072655 establishment of protein localization to mitochondrion IEP Predicted GO
CC GO:0098798 mitochondrial protein complex IEP Predicted GO
CC GO:0098799 outer mitochondrial membrane protein complex IEP Predicted GO
BP GO:1990542 mitochondrial transmembrane transport IEP Predicted GO
InterPro domains Description Start Stop
IPR000592 Ribosomal_S27e 59 113
No external refs found!