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  5. Seita.1G166300.1

Seita.1G166300.1


Description : component *(uL29) of large ribosomal-subunit (LSU) proteome


Gene families : OG_42_0001364 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001364_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.1G166300.1
Cluster HCAA Clusters: Cluster_75

Target Alias Description ECC score Gene Family Method Actions
438324 No alias Ribosomal L29 family protein 0.07 Orthogroups_2024-Update
A4A49_28237 No alias 60s ribosomal protein l35-4 0.07 Orthogroups_2024-Update
A4A49_63512 No alias 60s ribosomal protein l35-4 0.03 Orthogroups_2024-Update
AC206642.4_FG001 No alias Ribosomal L29 family protein 0.04 Orthogroups_2024-Update
Bradi5g07170 No alias Ribosomal L29 family protein 0.04 Orthogroups_2024-Update
Brara.A03526.1 No alias component *(uL29) of large ribosomal-subunit (LSU) proteome 0.06 Orthogroups_2024-Update
Brara.B00059.1 No alias component *(uL29) of large ribosomal-subunit (LSU) proteome 0.05 Orthogroups_2024-Update
Brara.C03268.1 No alias component *(uL29) of large ribosomal-subunit (LSU) proteome 0.1 Orthogroups_2024-Update
Brara.E03085.1 No alias component *(uL29) of large ribosomal-subunit (LSU) proteome 0.04 Orthogroups_2024-Update
Cre14.g617900 No alias Ribosomal L29 family protein 0.04 Orthogroups_2024-Update
GRMZM2G043279 No alias Ribosomal L29 family protein 0.07 Orthogroups_2024-Update
Glyma.10G291500 No alias Ribosomal L29 family protein 0.05 Orthogroups_2024-Update
Glyma.13G133900 No alias Ribosomal L29 family protein 0.03 Orthogroups_2024-Update
Glyma.20G240700 No alias Ribosomal L29 family protein 0.07 Orthogroups_2024-Update
HORVU2Hr1G068120.2 No alias component *(uL29) of large ribosomal-subunit (LSU) proteome 0.03 Orthogroups_2024-Update
Kfl00608_0050 kfl00608_0050_v1.1 (at5g02610 : 177.0) Ribosomal L29 family protein ;... 0.04 Orthogroups_2024-Update
MA_10429159g0020 No alias (at5g02610 : 210.0) Ribosomal L29 family protein ;... 0.04 Orthogroups_2024-Update
PSME_00020825-RA No alias (at5g02610 : 157.0) Ribosomal L29 family protein ;... 0.03 Orthogroups_2024-Update
Potri.008G048800 No alias Ribosomal L29 family protein 0.03 Orthogroups_2024-Update
Potri.010G212300 No alias Ribosomal L29 family protein 0.04 Orthogroups_2024-Update
Pp1s102_67V6 No alias 60s ribosomal protein l35 0.07 Orthogroups_2024-Update
Pp1s133_93V6 No alias 60s ribosomal protein l35 0.05 Orthogroups_2024-Update
Pp1s1_489V6 No alias 60s ribosomal protein l35 0.07 Orthogroups_2024-Update
Sobic.004G152400.1 No alias component *(uL29) of large ribosomal-subunit (LSU) proteome 0.07 Orthogroups_2024-Update
Sobic.004G152700.1 No alias component *(uL29) of large ribosomal-subunit (LSU) proteome 0.09 Orthogroups_2024-Update
Solyc04g010240 No alias 60S ribosomal protein L35 (AHRD V3.3 *** RL35_EUPES) 0.06 Orthogroups_2024-Update
Solyc05g054810 No alias 60S ribosomal protein L35 (AHRD V3.3 *** RL35_EUPES) 0.04 Orthogroups_2024-Update
Sopen04g005430 No alias Ribosomal L29 protein 0.05 Orthogroups_2024-Update
evm.model.contig_654.2 No alias (at5g02610 : 134.0) Ribosomal L29 family protein ;... 0.07 Orthogroups_2024-Update
evm.model.tig00000241.79 No alias (at3g55170 : 158.0) Ribosomal L29 family protein ;... 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA 16Dec
CC GO:0005840 ribosome IEA 16Dec
BP GO:0006412 translation IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003924 GTPase activity IEP Predicted GO
MF GO:0004190 aspartic-type endopeptidase activity IEP Predicted GO
MF GO:0004576 oligosaccharyl transferase activity IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
BP GO:0006486 protein glycosylation IEP Predicted GO
BP GO:0006487 protein N-linked glycosylation IEP Predicted GO
MF GO:0008097 5S rRNA binding IEP Predicted GO
CC GO:0008250 oligosaccharyltransferase complex IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
BP GO:0043413 macromolecule glycosylation IEP Predicted GO
CC GO:0044432 endoplasmic reticulum part IEP Predicted GO
MF GO:0070001 aspartic-type peptidase activity IEP Predicted GO
BP GO:0070085 glycosylation IEP Predicted GO
InterPro domains Description Start Stop
IPR001854 Ribosomal_L29/L35 8 64
No external refs found!