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  5. Seita.1G172000.1

Seita.1G172000.1


Description : SSU processome assembly factor *(UTP7)


Gene families : OG_42_0004970 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004970_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.1G172000.1
Cluster HCAA Clusters: Cluster_108

Target Alias Description ECC score Gene Family Method Actions
At3g10530 No alias F18K10.11 protein [Source:UniProtKB/TrEMBL;Acc:Q9LPP3] 0.02 Orthogroups_2024-Update
evm.model.contig_611.6 No alias (at3g10530 : 299.0) Transducin/WD40 repeat-like... 0.03 Orthogroups_2024-Update
evm.model.tig00001366.4 No alias (at3g10530 : 195.0) Transducin/WD40 repeat-like... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0004045 aminoacyl-tRNA hydrolase activity IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
MF GO:0008565 protein transporter activity IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
MF GO:0032977 membrane insertase activity IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
MF GO:0052689 carboxylic ester hydrolase activity IEP Predicted GO
MF GO:0140101 catalytic activity, acting on a tRNA IEP Predicted GO
InterPro domains Description Start Stop
IPR012952 BING4_C_dom 346 425
IPR001680 WD40_repeat 267 300
No external refs found!