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  5. Seita.1G172500.1

Seita.1G172500.1


Description : Unknown function


Gene families : OG_42_0001911 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001911_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.1G172500.1
Cluster HCAA Clusters: Cluster_181

Target Alias Description ECC score Gene Family Method Actions
At3g26910 No alias Hydroxyproline-rich glycoprotein family protein... 0.03 Orthogroups_2024-Update
HORVU3Hr1G028250.2 No alias Unknown function 0.04 Orthogroups_2024-Update
LOC_Os09g33510 No alias hydroxyproline-rich glycoprotein family protein,... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA 16Dec
CC GO:0005737 cytoplasm IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0001871 pattern binding IEP Predicted GO
MF GO:0005216 ion channel activity IEP Predicted GO
MF GO:0015267 channel activity IEP Predicted GO
MF GO:0015276 ligand-gated ion channel activity IEP Predicted GO
MF GO:0016853 isomerase activity IEP Predicted GO
CC GO:0019867 outer membrane IEP Predicted GO
MF GO:0022803 passive transmembrane transporter activity IEP Predicted GO
MF GO:0022834 ligand-gated channel activity IEP Predicted GO
MF GO:0022836 gated channel activity IEP Predicted GO
MF GO:0022838 substrate-specific channel activity IEP Predicted GO
MF GO:0022839 ion gated channel activity IEP Predicted GO
MF GO:0030247 polysaccharide binding IEP Predicted GO
InterPro domains Description Start Stop
IPR004148 BAR_dom 152 316
No external refs found!