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  5. Seita.1G186400.1

Seita.1G186400.1


Description : RING-H2-class ATL-subclass E3 ubiquitin ligase


Gene families : OG_42_0000003 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.1G186400.1
Cluster HCAA Clusters: Cluster_204

Target Alias Description ECC score Gene Family Method Actions
A4A49_59878 No alias ring-h2 finger protein atl60 0.03 Orthogroups_2024-Update
Brara.B00007.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
Brara.B02994.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Brara.C03025.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.04 Orthogroups_2024-Update
Brara.D02285.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.E03386.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Brara.G03117.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Brara.H01260.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Brara.K00650.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.05 Orthogroups_2024-Update
GRMZM2G029623 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
HORVU5Hr1G087860.1 No alias Unknown function 0.04 Orthogroups_2024-Update
HORVU7Hr1G120930.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.04 Orthogroups_2024-Update
LOC_Os06g05200 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.03 Orthogroups_2024-Update
MA_12352g0010 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
MA_44828g0020 No alias (at3g62690 : 89.0) Encodes a RING-H2 zinc finger protein... 0.03 Orthogroups_2024-Update
MA_5319g0010 No alias (at1g49230 : 120.0) RING/U-box superfamily protein;... 0.02 Orthogroups_2024-Update
Potri.013G073500 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Seita.1G203900.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
BP GO:0007275 multicellular organism development IEP Predicted GO
BP GO:0032501 multicellular organismal process IEP Predicted GO
MF GO:0035673 oligopeptide transmembrane transporter activity IEP Predicted GO
MF GO:0042887 amide transmembrane transporter activity IEP Predicted GO
MF GO:1904680 peptide transmembrane transporter activity IEP Predicted GO
InterPro domains Description Start Stop
IPR001841 Znf_RING 164 208
No external refs found!