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  5. Seita.1G193700.1

Seita.1G193700.1


Description : component *(TRM11) of TRM11-TRM112 tRNA guanosine-methyltransferase complex


Gene families : OG_42_0006012 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0006012_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.1G193700.1
Cluster HCAA Clusters: Cluster_45

Target Alias Description ECC score Gene Family Method Actions
Brara.B03235.1 No alias component *(TRM11) of TRM11-TRM112 tRNA... 0.03 Orthogroups_2024-Update
Brara.F03274.1 No alias component *(TRM11) of TRM11-TRM112 tRNA... 0.08 Orthogroups_2024-Update
Cre08.g359100 No alias methyltransferases;nucleic acid binding 0.08 Orthogroups_2024-Update
HORVU3Hr1G023160.3 No alias component *(TRM11) of TRM11-TRM112 tRNA... 0.03 Orthogroups_2024-Update
Sobic.004G177100.1 No alias component *(TRM11) of TRM11-TRM112 tRNA... 0.14 Orthogroups_2024-Update
evm.model.contig_4439.4 No alias (at3g26410 : 186.0) methyltransferases;nucleic acid... 0.03 Orthogroups_2024-Update
evm.model.tig00000093.66 No alias (at3g26410 : 83.6) methyltransferases;nucleic acid... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0008608 attachment of spindle microtubules to kinetochore IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
BP GO:0022402 cell cycle process IEP Predicted GO
BP GO:0030490 maturation of SSU-rRNA IEP Predicted GO
MF GO:0030515 snoRNA binding IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
CC GO:0031262 Ndc80 complex IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
CC GO:0044427 chromosomal part IEP Predicted GO
BP GO:0051315 attachment of mitotic spindle microtubules to kinetochore IEP Predicted GO
BP GO:1903047 mitotic cell cycle process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR000241 RNA_methylase_dom 193 314
No external refs found!