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At4g12570


Description : E3 ubiquitin-protein ligase UPL5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SU29]


Gene families : OG_42_0001767 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001767_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Arabidopsis release: At4g12570
Cluster HCCA clusters: Cluster_10

Target Alias Description ECC score Gene Family Method Actions
Glyma.07G265600 No alias ubiquitin protein ligase 5 0.03 Orthogroups_2024-Update
PSME_00047296-RA No alias (at4g12570 : 414.0) Knock-out mutants showed accelerated... 0.03 Orthogroups_2024-Update
Potri.006G011701 No alias ubiquitin protein ligase 5 0.03 Orthogroups_2024-Update
Solyc05g054080 No alias E3 ubiquitin-protein ligase-like protein (AHRD V3.3 ***... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA InterProScan predictions
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP Predicted GO
BP GO:0000097 sulfur amino acid biosynthetic process IEP Predicted GO
MF GO:0004470 malic enzyme activity IEP Predicted GO
MF GO:0004471 malate dehydrogenase (decarboxylating) (NAD+) activity IEP Predicted GO
CC GO:0005737 cytoplasm IEP Predicted GO
BP GO:0006534 cysteine metabolic process IEP Predicted GO
BP GO:0006535 cysteine biosynthetic process from serine IEP Predicted GO
BP GO:0006563 L-serine metabolic process IEP Predicted GO
MF GO:0009001 serine O-acetyltransferase activity IEP Predicted GO
BP GO:0009069 serine family amino acid metabolic process IEP Predicted GO
BP GO:0009070 serine family amino acid biosynthetic process IEP Predicted GO
BP GO:0016042 lipid catabolic process IEP Predicted GO
MF GO:0016412 serine O-acyltransferase activity IEP Predicted GO
MF GO:0016413 O-acetyltransferase activity IEP Predicted GO
MF GO:0016615 malate dehydrogenase activity IEP Predicted GO
BP GO:0019321 pentose metabolic process IEP Predicted GO
BP GO:0019344 cysteine biosynthetic process IEP Predicted GO
BP GO:0019566 arabinose metabolic process IEP Predicted GO
MF GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity IEP Predicted GO
MF GO:0042393 histone binding IEP Predicted GO
BP GO:0046373 L-arabinose metabolic process IEP Predicted GO
MF GO:0046556 alpha-L-arabinofuranosidase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR000626 Ubiquitin_dom 97 168
IPR000569 HECT_dom 560 860
No external refs found!