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  5. At4g12600

At4g12600


Description : Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein [Source:UniProtKB/TrEMBL;Acc:F4JRD3]


Gene families : OG_42_0002599 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002599_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Arabidopsis release: At4g12600
Cluster HCCA clusters: Cluster_8

Target Alias Description ECC score Gene Family Method Actions
159569 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.06 Orthogroups_2024-Update
Bradi1g68505 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.07 Orthogroups_2024-Update
Bradi3g21230 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.04 Orthogroups_2024-Update
Brara.B02667.1 No alias component *(Snu13) of snoRNP rRNA methylation complex &... 0.06 Orthogroups_2024-Update
Brara.C02711.1 No alias component *(Snu13) of snoRNP rRNA methylation complex &... 0.07 Orthogroups_2024-Update
Brara.I02254.1 No alias component *(Snu13) of snoRNP rRNA methylation complex &... 0.05 Orthogroups_2024-Update
Cre06.g249250 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.03 Orthogroups_2024-Update
Glyma.17G115400 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.04 Orthogroups_2024-Update
PSME_00035580-RA No alias (at4g22380 : 198.0) Ribosomal protein... 0.04 Orthogroups_2024-Update
Potri.019G087100 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.05 Orthogroups_2024-Update
Seita.9G473700.1 No alias component *(Snu13) of snoRNP rRNA methylation complex &... 0.04 Orthogroups_2024-Update
Solyc09g092080 No alias Ribosomal protein l7ae (AHRD V3.3 *** A0A0A0LF58_CUCSA) 0.03 Orthogroups_2024-Update
Sopen09g034950 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 0.02 Orthogroups_2024-Update
evm.model.tig00000600.11 No alias (at5g20160 : 121.0) Ribosomal protein... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Predicted GO
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity IEP Predicted GO
MF GO:0004797 thymidine kinase activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005622 intracellular IEP Predicted GO
CC GO:0005741 mitochondrial outer membrane IEP Predicted GO
CC GO:0005759 mitochondrial matrix IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
CC GO:0015934 large ribosomal subunit IEP Predicted GO
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP Predicted GO
MF GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0019136 deoxynucleoside kinase activity IEP Predicted GO
MF GO:0019205 nucleobase-containing compound kinase activity IEP Predicted GO
MF GO:0019206 nucleoside kinase activity IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
CC GO:0019867 outer membrane IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
CC GO:0031966 mitochondrial membrane IEP Predicted GO
CC GO:0031968 organelle outer membrane IEP Predicted GO
CC GO:0031974 membrane-enclosed lumen IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
CC GO:0032993 protein-DNA complex IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
CC GO:0043233 organelle lumen IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044391 ribosomal subunit IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044427 chromosomal part IEP Predicted GO
CC GO:0044429 mitochondrial part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
CC GO:0044815 DNA packaging complex IEP Predicted GO
CC GO:0070013 intracellular organelle lumen IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
CC GO:0098588 bounding membrane of organelle IEP Predicted GO
MF GO:0098599 palmitoyl hydrolase activity IEP Predicted GO
CC GO:0098805 whole membrane IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR004038 Ribosomal_L7Ae/L30e/S12e/Gad45 23 111
No external refs found!