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  5. Seita.1G204100.1

Seita.1G204100.1


Description : histone *(H3)


Gene families : OG_42_0000090 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000090_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.1G204100.1
Cluster HCAA Clusters: Cluster_2

Target Alias Description ECC score Gene Family Method Actions
176603 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
At5g10980 No alias Histone H3.3 [Source:UniProtKB/Swiss-Prot;Acc:P59169] 0.02 Orthogroups_2024-Update
Bradi2g24080 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
HORVU2Hr1G074240.4 No alias histone *(H3) 0.03 Orthogroups_2024-Update
HORVU3Hr1G063270.2 No alias histone *(H3) 0.03 Orthogroups_2024-Update
HORVU4Hr1G067970.1 No alias histone *(H3) 0.02 Orthogroups_2024-Update
MA_350032g0010 No alias (at5g10980 : 266.0) Histone superfamily protein;... 0.02 Orthogroups_2024-Update
PSME_00049842-RA No alias (at4g40030 : 143.0) Histone superfamily protein;... 0.06 Orthogroups_2024-Update
Potri.005G235700 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Sopen01g033790 No alias Core histone H2A/H2B/H3/H4 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEP Predicted GO
BP GO:0009966 regulation of signal transduction IEP Predicted GO
BP GO:0010646 regulation of cell communication IEP Predicted GO
BP GO:0016567 protein ubiquitination IEP Predicted GO
MF GO:0019787 ubiquitin-like protein transferase activity IEP Predicted GO
BP GO:0023051 regulation of signaling IEP Predicted GO
BP GO:0032446 protein modification by small protein conjugation IEP Predicted GO
BP GO:0048583 regulation of response to stimulus IEP Predicted GO
BP GO:0070647 protein modification by small protein conjugation or removal IEP Predicted GO
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 1 132
No external refs found!