Seita.1G209300.1

Description : MADS/AGL-type transcription factor

Gene families : OG_42_0000009 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria italica: Seita.1G209300.1

Target	Alias	Description	ECC score	Gene Family Method
GRMZM2G044408	No alias	AGAMOUS-like 44	0.02	Orthogroups_2024-Update
Glyma.15G058000	No alias	K-box region and MADS-box transcription factor family protein	0.03	Orthogroups_2024-Update
LOC_Os05g11380	No alias	OsMADS66 - MADS-box family gene with MIKCc type-box, expressed	0.01	Orthogroups_2024-Update
LOC_Os06g01890	No alias	MADS-box transcription factor, putative, expressed	0.02	Orthogroups_2024-Update
MA_35712g0010	No alias	(at4g11880 : 102.0) AGL12, AGL14, and AGL17 are all...	0.01	Orthogroups_2024-Update
PSME_00053030-RA	No alias	(q6q9i1\|mads7_orysa : 100.0) MADS-box transcription...	0.01	Orthogroups_2024-Update
Potri.002G062000	No alias	AGAMOUS-like 61	0.03	Orthogroups_2024-Update
Potri.004G131100	No alias	AGAMOUS-like 29	0.02	Orthogroups_2024-Update
Potri.008G041500	No alias	AGAMOUS-like 62	0.02	Orthogroups_2024-Update
Potri.008G098500	No alias	K-box region and MADS-box transcription factor family protein	0.02	Orthogroups_2024-Update
Potri.009G084100	No alias	AGAMOUS-like 62	0.01	Orthogroups_2024-Update
Sobic.002G258000.1	No alias	regulatory protein *(SEPALLATA) of floral meristem...	0.01	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	16Dec
MF	GO:0003700	DNA-binding transcription factor activity	IEA	16Dec
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	16Dec
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	16Dec
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
MF	GO:0046983	protein dimerization activity	IEA	16Dec
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003774	motor activity	IEP	Predicted GO
MF	GO:0003777	microtubule motor activity	IEP	Predicted GO
BP	GO:0006928	movement of cell or subcellular component	IEP	Predicted GO
BP	GO:0007017	microtubule-based process	IEP	Predicted GO
BP	GO:0007018	microtubule-based movement	IEP	Predicted GO
MF	GO:0008017	microtubule binding	IEP	Predicted GO
MF	GO:0008092	cytoskeletal protein binding	IEP	Predicted GO
MF	GO:0015631	tubulin binding	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR002487	TF_Kbox	83	170
IPR002100	TF_MADSbox	10	57

External Links

No external refs found!

Seita.1G209300.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation