Seita.1G214900.1

Description : component *(eL6) of large ribosomal-subunit (LSU) proteome

Gene families : OG_42_0002426 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002426_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria italica: Seita.1G214900.1
Cluster	HCAA Clusters: Cluster_85

Target	Alias	Description	ECC score	Gene Family Method
270686	No alias	Ribosomal protein L6 family protein	0.16	Orthogroups_2024-Update
At1g18540	No alias	60S ribosomal protein L6-1...	0.08	Orthogroups_2024-Update
At1g74060	No alias	60S ribosomal protein L6-2...	0.02	Orthogroups_2024-Update
Bradi3g08900	No alias	Ribosomal protein L6 family protein	0.12	Orthogroups_2024-Update
Bradi3g47410	No alias	Ribosomal protein L6 family protein	0.14	Orthogroups_2024-Update
Brara.B02104.1	No alias	component *(eL6) of large ribosomal-subunit (LSU) proteome	0.06	Orthogroups_2024-Update
Brara.H02417.1	No alias	component *(eL6) of large ribosomal-subunit (LSU) proteome	0.28	Orthogroups_2024-Update
Brara.I04782.1	No alias	component *(eL6) of large ribosomal-subunit (LSU) proteome	0.25	Orthogroups_2024-Update
Cre01.g011000	No alias	Ribosomal protein L6 family protein	0.16	Orthogroups_2024-Update
GRMZM2G024647	No alias	Ribosomal protein L6 family protein	0.04	Orthogroups_2024-Update
Glyma.05G184000	No alias	Ribosomal protein L6 family protein	0.17	Orthogroups_2024-Update
Glyma.08G141700	No alias	Ribosomal protein L6 family protein	0.13	Orthogroups_2024-Update
Glyma.08G141800	No alias	Ribosomal protein L6 family protein	0.05	Orthogroups_2024-Update
Glyma.08G151900	No alias	Ribosomal protein L6 family protein	0.16	Orthogroups_2024-Update
Glyma.15G271300	No alias	Ribosomal protein L6 family protein	0.21	Orthogroups_2024-Update
HORVU6Hr1G041750.3	No alias	component *(eL6) of large ribosomal-subunit (LSU) proteome	0.12	Orthogroups_2024-Update
HORVU6Hr1G052600.3	No alias	component *(eL6) of large ribosomal-subunit (LSU) proteome	0.18	Orthogroups_2024-Update
Kfl00488_0040	kfl00488_0040_v1.1	(p34091\|rl6_mescr : 230.0) 60S ribosomal protein L6...	0.09	Orthogroups_2024-Update
LOC_Os04g39700	No alias	60S ribosomal protein L6, putative, expressed	0.07	Orthogroups_2024-Update
MA_108607g0010	No alias	(p34091\|rl6_mescr : 343.0) 60S ribosomal protein L6...	0.1	Orthogroups_2024-Update
Mp3g11670.1	No alias	component RPL6 of LSU proteome component	0.03	Orthogroups_2024-Update
PSME_00031628-RA	No alias	(p34091\|rl6_mescr : 312.0) 60S ribosomal protein L6...	0.04	Orthogroups_2024-Update
PSME_00044973-RA	No alias	(p34091\|rl6_mescr : 327.0) 60S ribosomal protein L6...	0.11	Orthogroups_2024-Update
Potri.009G065800	No alias	Ribosomal protein L6 family protein	0.06	Orthogroups_2024-Update
Pp1s126_115V6	No alias	60s ribosomal protein l6	0.02	Orthogroups_2024-Update
Pp1s59_122V6	No alias	60s ribosomal protein	0.21	Orthogroups_2024-Update
Sobic.004G198400.1	No alias	component *(eL6) of large ribosomal-subunit (LSU) proteome	0.17	Orthogroups_2024-Update
Sobic.006G116700.1	No alias	component *(eL6) of large ribosomal-subunit (LSU) proteome	0.27	Orthogroups_2024-Update
Solyc04g014720	No alias	60S ribosomal protein L6 (AHRD V3.3 *** RL6_MESCR)	0.04	Orthogroups_2024-Update
Solyc05g054070	No alias	60S ribosomal protein L6 (AHRD V3.3 *** RL6_MESCR)	0.19	Orthogroups_2024-Update
Solyc11g012110	No alias	60S ribosomal protein L6 (AHRD V3.3 *** RL6_MESCR)	0.26	Orthogroups_2024-Update
Sopen05g032560	No alias	Ribosomal protein L6e	0.23	Orthogroups_2024-Update
Sopen11g006900	No alias	Ribosomal protein L6e	0.18	Orthogroups_2024-Update
evm.model.contig_2016.11	No alias	(p34091\|rl6_mescr : 131.0) 60S ribosomal protein L6...	0.24	Orthogroups_2024-Update
evm.model.tig00021127.127	No alias	(at1g74050 : 196.0) Ribosomal protein L6 family protein;...	0.17	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	16Dec
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	16Dec
BP	GO:0006412	translation	IEA	16Dec
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000120	RNA polymerase I transcription factor complex	IEP	Predicted GO
BP	GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	Predicted GO
MF	GO:0001882	nucleoside binding	IEP	Predicted GO
MF	GO:0001883	purine nucleoside binding	IEP	Predicted GO
BP	GO:0002097	tRNA wobble base modification	IEP	Predicted GO
BP	GO:0002098	tRNA wobble uridine modification	IEP	Predicted GO
MF	GO:0003676	nucleic acid binding	IEP	Predicted GO
MF	GO:0003723	RNA binding	IEP	Predicted GO
MF	GO:0003724	RNA helicase activity	IEP	Predicted GO
MF	GO:0003746	translation elongation factor activity	IEP	Predicted GO
MF	GO:0005525	GTP binding	IEP	Predicted GO
CC	GO:0005634	nucleus	IEP	Predicted GO
CC	GO:0005852	eukaryotic translation initiation factor 3 complex	IEP	Predicted GO
BP	GO:0006360	transcription by RNA polymerase I	IEP	Predicted GO
BP	GO:0006364	rRNA processing	IEP	Predicted GO
BP	GO:0006396	RNA processing	IEP	Predicted GO
BP	GO:0006400	tRNA modification	IEP	Predicted GO
BP	GO:0006414	translational elongation	IEP	Predicted GO
MF	GO:0008135	translation factor activity, RNA binding	IEP	Predicted GO
BP	GO:0016070	RNA metabolic process	IEP	Predicted GO
BP	GO:0016072	rRNA metabolic process	IEP	Predicted GO
MF	GO:0019001	guanyl nucleotide binding	IEP	Predicted GO
MF	GO:0019843	rRNA binding	IEP	Predicted GO
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Predicted GO
BP	GO:0030490	maturation of SSU-rRNA	IEP	Predicted GO
MF	GO:0030515	snoRNA binding	IEP	Predicted GO
CC	GO:0030684	preribosome	IEP	Predicted GO
MF	GO:0031267	small GTPase binding	IEP	Predicted GO
CC	GO:0032040	small-subunit processome	IEP	Predicted GO
MF	GO:0032549	ribonucleoside binding	IEP	Predicted GO
MF	GO:0032550	purine ribonucleoside binding	IEP	Predicted GO
MF	GO:0032561	guanyl ribonucleotide binding	IEP	Predicted GO
CC	GO:0033588	Elongator holoenzyme complex	IEP	Predicted GO
BP	GO:0034470	ncRNA processing	IEP	Predicted GO
BP	GO:0034660	ncRNA metabolic process	IEP	Predicted GO
BP	GO:0042254	ribosome biogenesis	IEP	Predicted GO
CC	GO:0043227	membrane-bounded organelle	IEP	Predicted GO
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	Predicted GO
BP	GO:0044085	cellular component biogenesis	IEP	Predicted GO
CC	GO:0044452	nucleolar part	IEP	Predicted GO
CC	GO:0044798	nuclear transcription factor complex	IEP	Predicted GO
MF	GO:0097159	organic cyclic compound binding	IEP	Predicted GO
MF	GO:1901363	heterocyclic compound binding	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR000915	60S_ribosomal_L6E	112	219

External Links

No external refs found!

Seita.1G214900.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation