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  5. Seita.1G215000.1

Seita.1G215000.1


Description : assembly factor involved in ITS1 rRNA removal *(BRIX1)


Gene families : OG_42_0004734 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004734_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.1G215000.1
Cluster HCAA Clusters: Cluster_45

Target Alias Description ECC score Gene Family Method Actions
At1g52930 No alias Ribosome biogenesis protein BRX1 homolog 2... 0.1 Orthogroups_2024-Update
At3g15460 No alias Ribosome biogenesis protein BRX1 homolog 1... 0.07 Orthogroups_2024-Update
Bradi3g47400 No alias Ribosomal RNA processing Brix domain protein 0.22 Orthogroups_2024-Update
Brara.A03134.1 No alias assembly factor involved in ITS1 rRNA removal *(BRIX1) 0.09 Orthogroups_2024-Update
Brara.C03571.1 No alias assembly factor involved in ITS1 rRNA removal *(BRIX1) 0.04 Orthogroups_2024-Update
Brara.E02594.1 No alias assembly factor involved in ITS1 rRNA removal *(BRIX1) 0.13 Orthogroups_2024-Update
Cre02.g095400 No alias Ribosomal RNA processing Brix domain protein 0.15 Orthogroups_2024-Update
HORVU6Hr1G052560.2 No alias assembly factor involved in ITS1 rRNA removal *(BRIX1) 0.04 Orthogroups_2024-Update
Kfl00237_0010 kfl00237_0010_v1.1 (at3g15460 : 339.0) Ribosomal RNA processing Brix domain... 0.02 Orthogroups_2024-Update
LOC_Os02g37870 No alias Brix domain containing protein, putative, expressed 0.03 Orthogroups_2024-Update
Mp4g04670.1 No alias BRX1 assembly factor involved in ITS1 rRNA removal 0.02 Orthogroups_2024-Update
PSME_00037429-RA No alias (at3g15460 : 416.0) Ribosomal RNA processing Brix domain... 0.03 Orthogroups_2024-Update
Pp1s106_134V6 No alias brix domain containing 2 0.03 Orthogroups_2024-Update
Sobic.004G198500.1 No alias assembly factor involved in ITS1 rRNA removal *(BRIX1) 0.27 Orthogroups_2024-Update
Solyc04g016380 No alias Ribosome biogenesis protein brix, putative (AHRD V3.3... 0.18 Orthogroups_2024-Update
evm.model.tig00001206.16 No alias (at1g52930 : 204.0) Ribosomal RNA processing Brix domain... 0.13 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0006364 rRNA processing IEA 16Dec
MF GO:0019843 rRNA binding IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0001510 RNA methylation IEP Predicted GO
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003924 GTPase activity IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005730 nucleolus IEP Predicted GO
CC GO:0005732 small nucleolar ribonucleoprotein complex IEP Predicted GO
CC GO:0005737 cytoplasm IEP Predicted GO
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Predicted GO
BP GO:0006325 chromatin organization IEP Predicted GO
BP GO:0006334 nucleosome assembly IEP Predicted GO
BP GO:0006400 tRNA modification IEP Predicted GO
BP GO:0006414 translational elongation IEP Predicted GO
MF GO:0008097 5S rRNA binding IEP Predicted GO
MF GO:0008134 transcription factor binding IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
MF GO:0008168 methyltransferase activity IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
MF GO:0016462 pyrophosphatase activity IEP Predicted GO
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Predicted GO
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Predicted GO
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Predicted GO
MF GO:0017111 nucleoside-triphosphatase activity IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
BP GO:0022607 cellular component assembly IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
BP GO:0030488 tRNA methylation IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
CC GO:0031515 tRNA (m1A) methyltransferase complex IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
BP GO:0032259 methylation IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
CC GO:0034457 Mpp10 complex IEP Predicted GO
BP GO:0034622 cellular protein-containing complex assembly IEP Predicted GO
CC GO:0034708 methyltransferase complex IEP Predicted GO
BP GO:0034728 nucleosome organization IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
CC GO:0043527 tRNA methyltransferase complex IEP Predicted GO
BP GO:0043933 protein-containing complex subunit organization IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
CC GO:0044452 nucleolar part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0065003 protein-containing complex assembly IEP Predicted GO
BP GO:0065004 protein-DNA complex assembly IEP Predicted GO
BP GO:0071824 protein-DNA complex subunit organization IEP Predicted GO
BP GO:0071840 cellular component organization or biogenesis IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR007109 Brix 68 257
No external refs found!