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  5. Seita.1G240900.1

Seita.1G240900.1


Description : cyclic nucleotide-gated cation channel *(CNGC)


Gene families : OG_42_0000108 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000108_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.1G240900.1
Cluster HCAA Clusters: Cluster_8

Target Alias Description ECC score Gene Family Method Actions
A4A49_20339 No alias cyclic nucleotide-gated ion channel 4 0.02 Orthogroups_2024-Update
A4A49_30061 No alias putative cyclic nucleotide-gated ion channel 14 0.03 Orthogroups_2024-Update
Glyma.16G218300 No alias cyclic nucleotide-binding transporter 1 0.05 Orthogroups_2024-Update
HORVU6Hr1G058880.14 No alias cyclic nucleotide-gated cation channel *(CNGC) 0.03 Orthogroups_2024-Update
LOC_Os02g41710 No alias cyclic nucleotide-gated ion channel, putative, expressed 0.03 Orthogroups_2024-Update
Mp3g14660.1 No alias cyclic nucleotide-gated cation channel (CNGC) 0.03 Orthogroups_2024-Update
Potri.006G271050 No alias cyclic nucleotide-gated channel 14 0.03 Orthogroups_2024-Update
Potri.017G089900 No alias Cyclic nucleotide-regulated ion channel family protein 0.04 Orthogroups_2024-Update
Potri.018G009200 No alias cyclic nucleotide-gated channel 14 0.04 Orthogroups_2024-Update
Pp1s37_149V6 No alias T3B23.7; cyclic nucleotide-regulated ion channel,... 0.02 Orthogroups_2024-Update
Solyc12g010010 No alias Cyclic nucleotide-gated ion channel, putative (AHRD V3.3... 0.02 Orthogroups_2024-Update
Sopen02g033280 No alias Cyclic nucleotide-binding domain 0.03 Orthogroups_2024-Update
Sopen09g002680 No alias Ion transport protein 0.02 Orthogroups_2024-Update
Sopen11g028290 No alias Ion transport protein 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005216 ion channel activity IEA 16Dec
BP GO:0006811 ion transport IEA 16Dec
CC GO:0016020 membrane IEA 16Dec
BP GO:0055085 transmembrane transport IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0004512 inositol-3-phosphate synthase activity IEP Predicted GO
MF GO:0004814 arginine-tRNA ligase activity IEP Predicted GO
CC GO:0005741 mitochondrial outer membrane IEP Predicted GO
BP GO:0006020 inositol metabolic process IEP Predicted GO
BP GO:0006021 inositol biosynthetic process IEP Predicted GO
BP GO:0006066 alcohol metabolic process IEP Predicted GO
BP GO:0006420 arginyl-tRNA aminoacylation IEP Predicted GO
MF GO:0016872 intramolecular lyase activity IEP Predicted GO
BP GO:0019751 polyol metabolic process IEP Predicted GO
CC GO:0019867 outer membrane IEP Predicted GO
CC GO:0031966 mitochondrial membrane IEP Predicted GO
CC GO:0031968 organelle outer membrane IEP Predicted GO
BP GO:0046165 alcohol biosynthetic process IEP Predicted GO
BP GO:0046173 polyol biosynthetic process IEP Predicted GO
CC GO:0098588 bounding membrane of organelle IEP Predicted GO
CC GO:0098805 whole membrane IEP Predicted GO
BP GO:1901615 organic hydroxy compound metabolic process IEP Predicted GO
BP GO:1901617 organic hydroxy compound biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR005821 Ion_trans_dom 94 412
No external refs found!