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  5. Seita.1G260700.1

Seita.1G260700.1


Description : Unknown function


Gene families : OG_42_0000145 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000145_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.1G260700.1
Cluster HCAA Clusters: Cluster_292

Target Alias Description ECC score Gene Family Method Actions
A4A49_57799 No alias putative expansin-b2 0.02 Orthogroups_2024-Update
GRMZM2G013002 No alias expansin B2 0.03 Orthogroups_2024-Update
GRMZM2G013671 No alias expansin B2 0.03 Orthogroups_2024-Update
GRMZM2G094990 No alias expansin B2 0.03 Orthogroups_2024-Update
GRMZM2G342246 No alias expansin B2 0.03 Orthogroups_2024-Update
Glyma.06G294500 No alias expansin B3 0.03 Orthogroups_2024-Update
Glyma.11G166546 No alias expansin B2 0.04 Orthogroups_2024-Update
Glyma.12G111200 No alias expansin B3 0.04 Orthogroups_2024-Update
HORVU4Hr1G088140.2 No alias Unknown function 0.03 Orthogroups_2024-Update
LOC_Os04g44780 No alias beta-expansin precursor, putative, expressed 0.03 Orthogroups_2024-Update
PSME_00039752-RA No alias (q7x6j9|exb17_orysa : 251.0) Expansin-B17 precursor... 0.01 Orthogroups_2024-Update
Pp1s251_59V6 No alias beta-expansin 3 0.02 Orthogroups_2024-Update
Seita.9G157100.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.001G300800.2 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.004G294500.1 No alias PNP precursor polypeptide 0.03 Orthogroups_2024-Update
Sopen03g024200 No alias Pollen allergen 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000439 transcription factor TFIIH core complex IEP Predicted GO
CC GO:0000775 chromosome, centromeric region IEP Predicted GO
MF GO:0001671 ATPase activator activity IEP Predicted GO
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Predicted GO
MF GO:0004650 polygalacturonase activity IEP Predicted GO
MF GO:0004857 enzyme inhibitor activity IEP Predicted GO
MF GO:0004866 endopeptidase inhibitor activity IEP Predicted GO
BP GO:0005975 carbohydrate metabolic process IEP Predicted GO
BP GO:0006289 nucleotide-excision repair IEP Predicted GO
BP GO:0006811 ion transport IEP Predicted GO
BP GO:0006812 cation transport IEP Predicted GO
BP GO:0006950 response to stress IEP Predicted GO
BP GO:0007059 chromosome segregation IEP Predicted GO
MF GO:0008324 cation transmembrane transporter activity IEP Predicted GO
BP GO:0009719 response to endogenous stimulus IEP Predicted GO
BP GO:0009725 response to hormone IEP Predicted GO
BP GO:0009733 response to auxin IEP Predicted GO
BP GO:0010033 response to organic substance IEP Predicted GO
MF GO:0015075 ion transmembrane transporter activity IEP Predicted GO
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP Predicted GO
BP GO:0016043 cellular component organization IEP Predicted GO
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Predicted GO
MF GO:0016837 carbon-oxygen lyase activity, acting on polysaccharides IEP Predicted GO
BP GO:0022402 cell cycle process IEP Predicted GO
MF GO:0022890 inorganic cation transmembrane transporter activity IEP Predicted GO
BP GO:0030001 metal ion transport IEP Predicted GO
CC GO:0030127 COPII vesicle coat IEP Predicted GO
MF GO:0030234 enzyme regulator activity IEP Predicted GO
MF GO:0030414 peptidase inhibitor activity IEP Predicted GO
MF GO:0030570 pectate lyase activity IEP Predicted GO
MF GO:0030599 pectinesterase activity IEP Predicted GO
MF GO:0031625 ubiquitin protein ligase binding IEP Predicted GO
BP GO:0042545 cell wall modification IEP Predicted GO
MF GO:0044389 ubiquitin-like protein ligase binding IEP Predicted GO
BP GO:0045132 meiotic chromosome segregation IEP Predicted GO
BP GO:0045229 external encapsulating structure organization IEP Predicted GO
MF GO:0046873 metal ion transmembrane transporter activity IEP Predicted GO
BP GO:0050896 response to stimulus IEP Predicted GO
MF GO:0052689 carboxylic ester hydrolase activity IEP Predicted GO
MF GO:0060590 ATPase regulator activity IEP Predicted GO
MF GO:0061134 peptidase regulator activity IEP Predicted GO
MF GO:0061135 endopeptidase regulator activity IEP Predicted GO
BP GO:0071554 cell wall organization or biogenesis IEP Predicted GO
BP GO:0071555 cell wall organization IEP Predicted GO
BP GO:0071840 cellular component organization or biogenesis IEP Predicted GO
CC GO:0098687 chromosomal region IEP Predicted GO
MF GO:0098772 molecular function regulator IEP Predicted GO
BP GO:0098813 nuclear chromosome segregation IEP Predicted GO
BP GO:1903046 meiotic cell cycle process IEP Predicted GO
InterPro domains Description Start Stop
IPR009009 RlpA-like_DPBB 106 187
IPR007117 Expansin_CBD 199 282
No external refs found!