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  5. Seita.1G276600.1

Seita.1G276600.1


Description : Unknown function


Gene families : OG_42_0000224 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000224_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.1G276600.1
Cluster HCAA Clusters: Cluster_128

Target Alias Description ECC score Gene Family Method Actions
A4A49_31391 No alias e3 ubiquitin-protein ligase boi 0.03 Orthogroups_2024-Update
Bradi5g08790 No alias SBP (S-ribonuclease binding protein) family protein 0.03 Orthogroups_2024-Update
Glyma.09G019900 No alias SBP (S-ribonuclease binding protein) family protein 0.02 Orthogroups_2024-Update
LOC_Os04g32980 No alias protein binding protein, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os04g33030 No alias protein binding protein, putative, expressed 0.02 Orthogroups_2024-Update
PSME_00040898-RA No alias (at1g10650 : 137.0) SBP (S-ribonuclease binding protein)... 0.02 Orthogroups_2024-Update
PSME_00048517-RA No alias (at1g10650 : 181.0) SBP (S-ribonuclease binding protein)... 0.02 Orthogroups_2024-Update
Sobic.001G428100.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.005G142300.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Solyc02g069180 No alias SBP (S-ribonuclease binding protein) family protein... 0.02 Orthogroups_2024-Update
Sopen02g009960 No alias Zinc finger, C3HC4 type (RING finger) 0.04 Orthogroups_2024-Update
evm.model.tig00021127.174 No alias no hits & (original description: no original description) 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP Predicted GO
BP GO:0000375 RNA splicing, via transesterification reactions IEP Predicted GO
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Predicted GO
BP GO:0000398 mRNA splicing, via spliceosome IEP Predicted GO
MF GO:0005216 ion channel activity IEP Predicted GO
CC GO:0005778 peroxisomal membrane IEP Predicted GO
BP GO:0006397 mRNA processing IEP Predicted GO
BP GO:0006914 autophagy IEP Predicted GO
BP GO:0008380 RNA splicing IEP Predicted GO
MF GO:0015276 ligand-gated ion channel activity IEP Predicted GO
BP GO:0016071 mRNA metabolic process IEP Predicted GO
BP GO:0016559 peroxisome fission IEP Predicted GO
MF GO:0022834 ligand-gated channel activity IEP Predicted GO
MF GO:0022836 gated channel activity IEP Predicted GO
MF GO:0022838 substrate-specific channel activity IEP Predicted GO
MF GO:0022839 ion gated channel activity IEP Predicted GO
CC GO:0031090 organelle membrane IEP Predicted GO
CC GO:0031903 microbody membrane IEP Predicted GO
CC GO:0042579 microbody IEP Predicted GO
CC GO:0044438 microbody part IEP Predicted GO
CC GO:0044439 peroxisomal part IEP Predicted GO
BP GO:0048285 organelle fission IEP Predicted GO
BP GO:0061919 process utilizing autophagic mechanism IEP Predicted GO
CC GO:0098588 bounding membrane of organelle IEP Predicted GO
CC GO:0098805 whole membrane IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!