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  5. Seita.1G283400.1

Seita.1G283400.1


Description : regulatory protein *(SBA) of mitochondrial nucleoid organization


Gene families : OG_42_0001970 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001970_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.1G283400.1
Cluster HCAA Clusters: Cluster_45

Target Alias Description ECC score Gene Family Method Actions
168159 No alias P-loop containing nucleoside triphosphate hydrolases... 0.03 Orthogroups_2024-Update
A4A49_39242 No alias cell division control protein 48-like d 0.04 Orthogroups_2024-Update
At2g18330 No alias AAA-type ATPase family protein... 0.04 Orthogroups_2024-Update
At3g03060 No alias P-loop containing nucleoside triphosphate hydrolases... 0.04 Orthogroups_2024-Update
At5g16930 No alias AAA-type ATPase family protein... 0.03 Orthogroups_2024-Update
Brara.A00229.1 No alias regulatory protein *(SBA) of mitochondrial nucleoid organization 0.05 Orthogroups_2024-Update
Brara.A03846.1 No alias regulatory protein *(SBA) of mitochondrial nucleoid organization 0.02 Orthogroups_2024-Update
Brara.B00686.1 No alias regulatory protein *(SBA) of mitochondrial nucleoid organization 0.12 Orthogroups_2024-Update
Brara.E03540.1 No alias regulatory protein *(SBA) of mitochondrial nucleoid organization 0.05 Orthogroups_2024-Update
Brara.J01839.1 No alias regulatory protein *(SBA) of mitochondrial nucleoid organization 0.08 Orthogroups_2024-Update
Cre03.g144967 No alias P-loop containing nucleoside triphosphate hydrolases... 0.01 Orthogroups_2024-Update
GRMZM2G067242 No alias AAA-type ATPase family protein 0.04 Orthogroups_2024-Update
GRMZM2G069422 No alias AAA-type ATPase family protein 0.04 Orthogroups_2024-Update
Glyma.11G069000 No alias AAA-type ATPase family protein 0.06 Orthogroups_2024-Update
Glyma.11G091700 No alias P-loop containing nucleoside triphosphate hydrolases... 0.13 Orthogroups_2024-Update
Glyma.12G017700 No alias P-loop containing nucleoside triphosphate hydrolases... 0.06 Orthogroups_2024-Update
Kfl01685_0010 kfl01685_0010_v1.... (at5g16930 : 132.0) AAA-type ATPase family protein;... 0.03 Orthogroups_2024-Update
LOC_Os02g47760 No alias AAA-type ATPase family protein, putative, expressed 0.03 Orthogroups_2024-Update
Potri.001G458200 No alias AAA-type ATPase family protein 0.06 Orthogroups_2024-Update
Potri.007G023900 No alias AAA-type ATPase family protein 0.06 Orthogroups_2024-Update
Sobic.004G272400.1 No alias regulatory protein *(SBA) of mitochondrial nucleoid organization 0.19 Orthogroups_2024-Update
Solyc02g062700 No alias AAA-type ATPase family protein (AHRD V3.3 *** AT2G18330.1) 0.05 Orthogroups_2024-Update
Solyc03g097020 No alias AAA-type ATPase family protein 0.13 Orthogroups_2024-Update
Sopen02g013720 No alias Domain of unknown function (DUF3523) 0.13 Orthogroups_2024-Update
Sopen03g027770 No alias Domain of unknown function (DUF3523) 0.11 Orthogroups_2024-Update
evm.model.contig_3464.1 No alias (at3g03060 : 297.0) P-loop containing nucleoside... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA 16Dec
MF GO:0016887 ATPase activity IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Predicted GO
MF GO:0004645 phosphorylase activity IEP Predicted GO
CC GO:0005730 nucleolus IEP Predicted GO
CC GO:0005732 small nucleolar ribonucleoprotein complex IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0007186 G protein-coupled receptor signaling pathway IEP Predicted GO
MF GO:0008184 glycogen phosphorylase activity IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0016859 cis-trans isomerase activity IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
MF GO:0031683 G-protein beta/gamma-subunit complex binding IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
CC GO:0034457 Mpp10 complex IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
CC GO:0044452 nucleolar part IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR003959 ATPase_AAA_core 410 536
IPR021911 DUF3523 72 340
No external refs found!