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  5. Seita.1G299800.1

Seita.1G299800.1


Description : substrate adaptor of CUL4-based E3 ubiquitin ligase complex


Gene families : OG_42_0000776 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000776_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.1G299800.1
Cluster HCAA Clusters: Cluster_210

Target Alias Description ECC score Gene Family Method Actions
Bradi1g48090 No alias Transducin/WD40 repeat-like superfamily protein 0.04 Orthogroups_2024-Update
Bradi3g35550 No alias Transducin/WD40 repeat-like superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G144547 No alias Transducin/WD40 repeat-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.18G284000 No alias Transducin/WD40 repeat-like superfamily protein 0.02 Orthogroups_2024-Update
Sobic.004G257400.1 No alias substrate adaptor of CUL4-based E3 ubiquitin ligase complex 0.03 Orthogroups_2024-Update
Sopen09g036250 No alias WD domain, G-beta repeat 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0000062 fatty-acyl-CoA binding IEP Predicted GO
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Predicted GO
CC GO:0000786 nucleosome IEP Predicted GO
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Predicted GO
MF GO:0003839 gamma-glutamylcyclotransferase activity IEP Predicted GO
MF GO:0003887 DNA-directed DNA polymerase activity IEP Predicted GO
MF GO:0004518 nuclease activity IEP Predicted GO
MF GO:0004842 ubiquitin-protein transferase activity IEP Predicted GO
CC GO:0005643 nuclear pore IEP Predicted GO
BP GO:0006401 RNA catabolic process IEP Predicted GO
BP GO:0006402 mRNA catabolic process IEP Predicted GO
BP GO:0006497 protein lipidation IEP Predicted GO
BP GO:0006505 GPI anchor metabolic process IEP Predicted GO
BP GO:0006506 GPI anchor biosynthetic process IEP Predicted GO
BP GO:0006661 phosphatidylinositol biosynthetic process IEP Predicted GO
BP GO:0006749 glutathione metabolic process IEP Predicted GO
BP GO:0006751 glutathione catabolic process IEP Predicted GO
BP GO:0016071 mRNA metabolic process IEP Predicted GO
BP GO:0016567 protein ubiquitination IEP Predicted GO
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP Predicted GO
MF GO:0016842 amidine-lyase activity IEP Predicted GO
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Predicted GO
MF GO:0019787 ubiquitin-like protein transferase activity IEP Predicted GO
BP GO:0032446 protein modification by small protein conjugation IEP Predicted GO
CC GO:0032993 protein-DNA complex IEP Predicted GO
MF GO:0034061 DNA polymerase activity IEP Predicted GO
BP GO:0042219 cellular modified amino acid catabolic process IEP Predicted GO
MF GO:0042578 phosphoric ester hydrolase activity IEP Predicted GO
BP GO:0043171 peptide catabolic process IEP Predicted GO
BP GO:0044273 sulfur compound catabolic process IEP Predicted GO
CC GO:0044815 DNA packaging complex IEP Predicted GO
BP GO:0046474 glycerophospholipid biosynthetic process IEP Predicted GO
BP GO:0051187 cofactor catabolic process IEP Predicted GO
MF GO:1901567 fatty acid derivative binding IEP Predicted GO
InterPro domains Description Start Stop
IPR001680 WD40_repeat 244 282
No external refs found!