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  5. Seita.1G309900.1

Seita.1G309900.1


Description : organelle RNA splicing factor *(APO)


Gene families : OG_42_0001137 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001137_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.1G309900.1
Cluster HCAA Clusters: Cluster_144

Target Alias Description ECC score Gene Family Method Actions
Glyma.09G154900 No alias Arabidopsis thaliana protein of unknown function (DUF794) 0.03 Orthogroups_2024-Update
PSME_00001663-RA No alias (at3g21740 : 313.0) ACCUMULATION OF PHOTOSYSTEM ONE 4;... 0.03 Orthogroups_2024-Update
PSME_00004747-RA No alias (at5g61930 : 320.0) ACCUMULATION OF PHOTOSYSTEM ONE 3;... 0.03 Orthogroups_2024-Update
PSME_00015410-RA No alias (at5g61930 : 368.0) ACCUMULATION OF PHOTOSYSTEM ONE 3;... 0.03 Orthogroups_2024-Update
Sobic.006G224300.1 No alias organelle RNA splicing factor *(APO) 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0004177 aminopeptidase activity IEP Predicted GO
BP GO:0006413 translational initiation IEP Predicted GO
BP GO:0006508 proteolysis IEP Predicted GO
MF GO:0008235 metalloexopeptidase activity IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
MF GO:0070006 metalloaminopeptidase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR023342 APO_dom 72 270
IPR023342 APO_dom 305 419
No external refs found!