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  5. Seita.1G314000.1

Seita.1G314000.1


Description : component *(eS8) of small ribosomal-subunit (SSU) proteome


Gene families : OG_42_0001226 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001226_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.1G314000.1
Cluster HCAA Clusters: Cluster_85

Target Alias Description ECC score Gene Family Method Actions
A4A49_00086 No alias 40s ribosomal protein s8 0.18 Orthogroups_2024-Update
A4A49_00202 No alias 40s ribosomal protein s8 0.14 Orthogroups_2024-Update
A4A49_17431 No alias 40s ribosomal protein s8 0.12 Orthogroups_2024-Update
A4A49_61985 No alias 40s ribosomal protein s8 0.07 Orthogroups_2024-Update
A4A49_62566 No alias 40s ribosomal protein s8 0.11 Orthogroups_2024-Update
Bradi1g51357 No alias Ribosomal protein S8e family protein 0.22 Orthogroups_2024-Update
Bradi3g43560 No alias Ribosomal protein S8e family protein 0.23 Orthogroups_2024-Update
Brara.B00878.1 No alias component *(eS8) of small ribosomal-subunit (SSU) proteome 0.21 Orthogroups_2024-Update
Brara.C00929.1 No alias component *(eS8) of small ribosomal-subunit (SSU) proteome 0.29 Orthogroups_2024-Update
Brara.J01583.1 No alias component *(eS8) of small ribosomal-subunit (SSU) proteome 0.32 Orthogroups_2024-Update
Cre06.g272800 No alias Ribosomal protein S8e family protein 0.22 Orthogroups_2024-Update
GRMZM2G030228 No alias Ribosomal protein S8e family protein 0.17 Orthogroups_2024-Update
GRMZM2G336875 No alias Ribosomal protein S8e family protein 0.09 Orthogroups_2024-Update
Glyma.03G086400 No alias Ribosomal protein S8e family protein 0.23 Orthogroups_2024-Update
Glyma.08G346500 No alias Ribosomal protein S8e family protein 0.1 Orthogroups_2024-Update
Glyma.16G087700 No alias Ribosomal protein S8e family protein 0.21 Orthogroups_2024-Update
Glyma.18G157300 No alias Ribosomal protein S8e family protein 0.17 Orthogroups_2024-Update
HORVU2Hr1G067370.5 No alias Unknown function 0.2 Orthogroups_2024-Update
Kfl00279_0040 kfl00279_0040_v1.1 (p49199|rs8_orysa : 268.0) 40S ribosomal protein S8 -... 0.08 Orthogroups_2024-Update
LOC_Os02g28810 No alias ribosomal protein, putative, expressed 0.06 Orthogroups_2024-Update
LOC_Os04g28180 No alias ribosomal protein, putative, expressed 0.03 Orthogroups_2024-Update
MA_14571g0010 No alias (p49199|rs8_orysa : 265.0) 40S ribosomal protein S8 -... 0.04 Orthogroups_2024-Update
MA_9738483g0010 No alias (p49199|rs8_orysa : 198.0) 40S ribosomal protein S8 -... 0.03 Orthogroups_2024-Update
Mp2g16300.1 No alias component RPS8 of SSU proteome 0.2 Orthogroups_2024-Update
PSME_00001605-RA No alias (q08069|rs8_maize : 279.0) 40S ribosomal protein S8 -... 0.13 Orthogroups_2024-Update
Potri.001G262100 No alias Ribosomal protein S8e family protein 0.06 Orthogroups_2024-Update
Potri.009G056900 No alias Ribosomal protein S8e family protein 0.12 Orthogroups_2024-Update
Potri.017G110000 No alias Ribosomal protein S8e family protein 0.1 Orthogroups_2024-Update
Pp1s162_83V6 No alias 40s ribosomal protein 0.2 Orthogroups_2024-Update
Pp1s223_73V6 No alias 40s ribosomal protein 0.1 Orthogroups_2024-Update
Pp1s227_85V6 No alias 40s ribosomal protein 0.18 Orthogroups_2024-Update
Pp1s292_14V6 No alias 40s ribosomal protein 0.28 Orthogroups_2024-Update
Pp1s46_183V6 No alias 40s ribosomal protein 0.02 Orthogroups_2024-Update
Seita.7G057900.1 No alias component *(eS8) of small ribosomal-subunit (SSU) proteome 0.13 Orthogroups_2024-Update
Sobic.004G244800.1 No alias component *(eS8) of small ribosomal-subunit (SSU) proteome 0.25 Orthogroups_2024-Update
Sobic.006G035900.1 No alias component *(eS8) of small ribosomal-subunit (SSU) proteome 0.28 Orthogroups_2024-Update
Solyc06g007570 No alias 40S ribosomal protein S8 (AHRD V3.3 *** K4C3D8_SOLLC) 0.21 Orthogroups_2024-Update
Solyc06g083180 No alias 40S ribosomal protein S8 (AHRD V3.3 *** K4CAH3_SOLLC) 0.19 Orthogroups_2024-Update
Solyc07g065170 No alias 40S ribosomal protein S8 (AHRD V3.3 *** K4CHJ6_SOLLC) 0.17 Orthogroups_2024-Update
Solyc09g057650 No alias 40S ribosomal protein S8 (AHRD V3.3 *** K4CTF6_SOLLC) 0.17 Orthogroups_2024-Update
Solyc10g006070 No alias 40S ribosomal protein S8 (AHRD V3.3 *** K4CXD9_SOLLC) 0.08 Orthogroups_2024-Update
Sopen06g002470 No alias Ribosomal protein S8e 0.27 Orthogroups_2024-Update
Sopen06g034570 No alias Ribosomal protein S8e 0.21 Orthogroups_2024-Update
Sopen07g033390 No alias Ribosomal protein S8e 0.23 Orthogroups_2024-Update
Sopen09g021090 No alias Ribosomal protein S8e 0.15 Orthogroups_2024-Update
Sopen10g002020 No alias Ribosomal protein S8e 0.17 Orthogroups_2024-Update
evm.model.contig_4462.6 No alias (q08069|rs8_maize : 255.0) 40S ribosomal protein S8 -... 0.39 Orthogroups_2024-Update
evm.model.tig00020610.79 No alias (p49199|rs8_orysa : 269.0) 40S ribosomal protein S8 -... 0.17 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0003746 translation elongation factor activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006325 chromatin organization IEP Predicted GO
BP GO:0006334 nucleosome assembly IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006414 translational elongation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
BP GO:0008150 biological_process IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
BP GO:0022607 cellular component assembly IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0034622 cellular protein-containing complex assembly IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0034728 nucleosome organization IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0043933 protein-containing complex subunit organization IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0065003 protein-containing complex assembly IEP Predicted GO
BP GO:0065004 protein-DNA complex assembly IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
BP GO:0071824 protein-DNA complex subunit organization IEP Predicted GO
BP GO:0071840 cellular component organization or biogenesis IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR022309 Ribosomal_S8e/biogenesis_NSA2 5 199
No external refs found!