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  5. Seita.1G318000.1

Seita.1G318000.1


Description : alpha-class expansin


Gene families : OG_42_0000014 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000014_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.1G318000.1
Cluster HCAA Clusters: Cluster_275

Target Alias Description ECC score Gene Family Method Actions
A4A49_64370 No alias expansin-a1 0.02 Orthogroups_2024-Update
Bradi5g04120 No alias expansin 11 0.03 Orthogroups_2024-Update
Brara.D00393.1 No alias alpha-class expansin 0.02 Orthogroups_2024-Update
Glyma.12G150900 No alias expansin 12 0.03 Orthogroups_2024-Update
Glyma.18G265400 No alias expansin A23 0.03 Orthogroups_2024-Update
LOC_Os02g51040 No alias expansin precursor, putative, expressed 0.02 Orthogroups_2024-Update
MA_4979g0010 No alias (q40636|expa2_orysa : 406.0) Expansin-A2 precursor... 0.03 Orthogroups_2024-Update
Mp1g22720.1 No alias Expansin-A4 OS=Arabidopsis thaliana... 0.02 Orthogroups_2024-Update
PSME_00018431-RA No alias (at2g40610 : 390.0) member of Alpha-Expansin Gene... 0.02 Orthogroups_2024-Update
Potri.004G123200 No alias expansin A1 0.03 Orthogroups_2024-Update
Potri.013G154700 No alias expansin A8 0.02 Orthogroups_2024-Update
Pp1s11_29V6 No alias expansin 2 0.02 Orthogroups_2024-Update
Pp1s25_294V6 No alias expansin 2 0.02 Orthogroups_2024-Update
Pp1s75_138V6 No alias alpha-expansin 8 0.01 Orthogroups_2024-Update
Sobic.003G444400.1 No alias alpha-class expansin 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity IEP Predicted GO
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Predicted GO
MF GO:0005507 copper ion binding IEP Predicted GO
BP GO:0006694 steroid biosynthetic process IEP Predicted GO
BP GO:0008202 steroid metabolic process IEP Predicted GO
MF GO:0016229 steroid dehydrogenase activity IEP Predicted GO
BP GO:0017004 cytochrome complex assembly IEP Predicted GO
BP GO:0019321 pentose metabolic process IEP Predicted GO
BP GO:0019566 arabinose metabolic process IEP Predicted GO
MF GO:0030246 carbohydrate binding IEP Predicted GO
MF GO:0033764 steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Predicted GO
BP GO:0046373 L-arabinose metabolic process IEP Predicted GO
MF GO:0046556 alpha-L-arabinofuranosidase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR007117 Expansin_CBD 196 274
IPR009009 RlpA-like_DPBB 97 185
No external refs found!