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  5. At4g13710

At4g13710


Description : Probable pectate lyase 15 [Source:UniProtKB/Swiss-Prot;Acc:Q944R1]


Gene families : OG_42_0000086 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000086_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Arabidopsis release: At4g13710
Cluster HCCA clusters: Cluster_167

Target Alias Description ECC score Gene Family Method Actions
At4g22080 No alias Probable pectate lyase 16... 0.03 Orthogroups_2024-Update
Brara.G02558.1 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.03 Orthogroups_2024-Update
Brara.I03757.1 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.02 Orthogroups_2024-Update
Glyma.05G044000 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
PSME_00009672-RA No alias (at5g48900 : 608.0) Pectin lyase-like superfamily... 0.04 Orthogroups_2024-Update
PSME_00017513-RA No alias (at4g24780 : 555.0) Pectin lyase-like superfamily... 0.04 Orthogroups_2024-Update
Potri.011G008000 No alias root hair specific 14 0.03 Orthogroups_2024-Update
Solyc03g058890 No alias Pectate lyase (AHRD V3.3 *** K4BGT7_SOLLC) 0.03 Orthogroups_2024-Update
Solyc06g071840 No alias Pectate lyase (AHRD V3.3 *-* M1CKT3_SOLTU) 0.07 Orthogroups_2024-Update
Sopen03g030810 No alias Pectate lyase 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005096 GTPase activator activity IEP Predicted GO
BP GO:0006351 transcription, DNA-templated IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
BP GO:0008037 cell recognition IEP Predicted GO
MF GO:0008047 enzyme activator activity IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0022414 reproductive process IEP Predicted GO
MF GO:0030695 GTPase regulator activity IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
BP GO:0048544 recognition of pollen IEP Predicted GO
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP Predicted GO
BP GO:0097659 nucleic acid-templated transcription IEP Predicted GO
InterPro domains Description Start Stop
IPR002022 Pec_lyase 208 385
No external refs found!