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Description : RNA editing factor *(CLB19)
Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Setaria italica: Seita.1G334200.1 | |
| Cluster | HCAA Clusters: Cluster_230 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| 412514 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
| At5g48910 | No alias | Pentatricopeptide repeat-containing protein At5g48910... | 0.05 | Orthogroups_2024-Update | |
| Bradi2g55230 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Glyma.15G016600 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Glyma.15G273200 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
| HORVU2Hr1G063300.4 | No alias | RNA editing factor *(ELI1) | 0.05 | Orthogroups_2024-Update | |
| HORVU4Hr1G014730.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
| LOC_Os01g15530 | No alias | tetratricopeptide-like helical, putative, expressed | 0.03 | Orthogroups_2024-Update | |
| LOC_Os03g13230 | No alias | pentatricopeptide, putative, expressed | 0.02 | Orthogroups_2024-Update | |
| MA_124868g0020 | No alias | (at4g13650 : 517.0) Pentatricopeptide repeat (PPR)... | 0.03 | Orthogroups_2024-Update | |
| PSME_00004138-RA | No alias | (at1g11290 : 633.0) Pentatricopeptide Repeat Protein... | 0.04 | Orthogroups_2024-Update | |
| PSME_00010400-RA | No alias | (at4g02750 : 490.0) Tetratricopeptide repeat (TPR)-like... | 0.03 | Orthogroups_2024-Update | |
| PSME_00024530-RA | No alias | (at4g18750 : 707.0) Encodes a pentatricopeptide (PPR)... | 0.02 | Orthogroups_2024-Update | |
| PSME_00025245-RA | No alias | (at3g03580 : 656.0) Tetratricopeptide repeat (TPR)-like... | 0.03 | Orthogroups_2024-Update | |
| PSME_00026228-RA | No alias | (at3g57430 : 606.0) Encodes a chloroplast RNA editing... | 0.06 | Orthogroups_2024-Update | |
| PSME_00048581-RA | No alias | (at4g02750 : 590.0) Tetratricopeptide repeat (TPR)-like... | 0.03 | Orthogroups_2024-Update | |
| Potri.001G019500 | No alias | SLOW GROWTH 1 | 0.03 | Orthogroups_2024-Update | |
| Potri.007G146800 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.04 | Orthogroups_2024-Update | |
| Potri.016G065500 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Potri.016G077700 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Pp1s178_15V6 | No alias | T1B8.1; pentatricopeptide (PPR) repeat-containing... | 0.04 | Orthogroups_2024-Update | |
| Seita.3G224300.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Seita.7G293800.1 | No alias | RNA editing factor *(REME2/PGL1) | 0.03 | Orthogroups_2024-Update | |
| Solyc11g007230 | No alias | LOW QUALITY:Pentatricopeptide repeat-containing protein... | 0.02 | Orthogroups_2024-Update | |
| Sopen00g008750 | No alias | PPR repeat | 0.02 | Orthogroups_2024-Update | |
| Sopen01g002910 | No alias | PPR repeat | 0.02 | Orthogroups_2024-Update | |
| Sopen01g041720 | No alias | PPR repeat family | 0.02 | Orthogroups_2024-Update | |
| Sopen02g025050 | No alias | PPR repeat family | 0.02 | Orthogroups_2024-Update | |
| Sopen03g016890 | No alias | PPR repeat | 0.04 | Orthogroups_2024-Update | |
| Sopen11g029050 | No alias | PPR repeat family | 0.03 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000413 | protein peptidyl-prolyl isomerization | IEP | Predicted GO |
| MF | GO:0003697 | single-stranded DNA binding | IEP | Predicted GO |
| MF | GO:0004358 | glutamate N-acetyltransferase activity | IEP | Predicted GO |
| BP | GO:0006525 | arginine metabolic process | IEP | Predicted GO |
| BP | GO:0006526 | arginine biosynthetic process | IEP | Predicted GO |
| MF | GO:0008080 | N-acetyltransferase activity | IEP | Predicted GO |
| BP | GO:0009064 | glutamine family amino acid metabolic process | IEP | Predicted GO |
| BP | GO:0009084 | glutamine family amino acid biosynthetic process | IEP | Predicted GO |
| MF | GO:0010181 | FMN binding | IEP | Predicted GO |
| MF | GO:0016407 | acetyltransferase activity | IEP | Predicted GO |
| MF | GO:0016410 | N-acyltransferase activity | IEP | Predicted GO |
| MF | GO:0016853 | isomerase activity | IEP | Predicted GO |
| BP | GO:0018208 | peptidyl-proline modification | IEP | Predicted GO |
| MF | GO:0031072 | heat shock protein binding | IEP | Predicted GO |
| BP | GO:0043461 | proton-transporting ATP synthase complex assembly | IEP | Predicted GO |
| MF | GO:0051082 | unfolded protein binding | IEP | Predicted GO |
| BP | GO:0070071 | proton-transporting two-sector ATPase complex assembly | IEP | Predicted GO |
| BP | GO:1901607 | alpha-amino acid biosynthetic process | IEP | Predicted GO |
| No external refs found! |