1. Home
  2. Species
  3. Setaria italica
  4. Sequence
  5. Seita.1G350600.1

Seita.1G350600.1


Description : bHLH-type transcription factor


Gene families : OG_42_0000630 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000630_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.1G350600.1
Cluster HCAA Clusters: Cluster_98

Target Alias Description ECC score Gene Family Method Actions
GRMZM2G116785 No alias LJRHL1-like 1 0.04 Orthogroups_2024-Update
Kfl00012_0330 kfl00012_0330_v1.1 (at2g24260 : 109.0) Encodes a basic helix-loop-helix... 0.02 Orthogroups_2024-Update
LOC_Os02g35660 No alias PTF1, putative, expressed 0.03 Orthogroups_2024-Update
PSME_00020366-RA No alias (at4g30980 : 101.0) Encodes a basic helix-loop-helix... 0.02 Orthogroups_2024-Update
Seita.2G205900.1 No alias bHLH-type transcription factor 0.03 Orthogroups_2024-Update
Solyc09g065820 No alias bHLH transcription factor 059 0.03 Orthogroups_2024-Update
Sopen07g001380 No alias Helix-loop-helix DNA-binding domain 0.02 Orthogroups_2024-Update
Sopen09g032140 No alias Helix-loop-helix DNA-binding domain 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP Predicted GO
BP GO:0000160 phosphorelay signal transduction system IEP Predicted GO
MF GO:0004176 ATP-dependent peptidase activity IEP Predicted GO
MF GO:0004619 phosphoglycerate mutase activity IEP Predicted GO
CC GO:0005743 mitochondrial inner membrane IEP Predicted GO
CC GO:0005856 cytoskeleton IEP Predicted GO
BP GO:0006006 glucose metabolic process IEP Predicted GO
BP GO:0006007 glucose catabolic process IEP Predicted GO
BP GO:0006534 cysteine metabolic process IEP Predicted GO
BP GO:0006839 mitochondrial transport IEP Predicted GO
BP GO:0006848 pyruvate transport IEP Predicted GO
BP GO:0006850 mitochondrial pyruvate transmembrane transport IEP Predicted GO
BP GO:0007165 signal transduction IEP Predicted GO
BP GO:0009069 serine family amino acid metabolic process IEP Predicted GO
BP GO:0009092 homoserine metabolic process IEP Predicted GO
MF GO:0015276 ligand-gated ion channel activity IEP Predicted GO
BP GO:0015718 monocarboxylic acid transport IEP Predicted GO
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Predicted GO
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP Predicted GO
BP GO:0019318 hexose metabolic process IEP Predicted GO
BP GO:0019320 hexose catabolic process IEP Predicted GO
BP GO:0019346 transsulfuration IEP Predicted GO
CC GO:0019866 organelle inner membrane IEP Predicted GO
MF GO:0022834 ligand-gated channel activity IEP Predicted GO
MF GO:0030145 manganese ion binding IEP Predicted GO
CC GO:0031966 mitochondrial membrane IEP Predicted GO
BP GO:0035556 intracellular signal transduction IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
BP GO:0044282 small molecule catabolic process IEP Predicted GO
BP GO:0046365 monosaccharide catabolic process IEP Predicted GO
BP GO:0050667 homocysteine metabolic process IEP Predicted GO
MF GO:0071949 FAD binding IEP Predicted GO
BP GO:0098656 anion transmembrane transport IEP Predicted GO
BP GO:1901475 pyruvate transmembrane transport IEP Predicted GO
BP GO:1903825 organic acid transmembrane transport IEP Predicted GO
BP GO:1905039 carboxylic acid transmembrane transport IEP Predicted GO
BP GO:1990542 mitochondrial transmembrane transport IEP Predicted GO
InterPro domains Description Start Stop
IPR011598 bHLH_dom 202 247
No external refs found!