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  5. Seita.1G351900.1

Seita.1G351900.1


Description : component *(eL39) of large ribosomal-subunit (LSU) proteome


Gene families : OG_42_0002686 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002686_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.1G351900.1
Cluster HCAA Clusters: Cluster_37

Target Alias Description ECC score Gene Family Method Actions
At2g25210 No alias Ribosomal protein L39 family protein [Source:TAIR;Acc:AT2G25210] 0.03 Orthogroups_2024-Update
Bradi3g54170 No alias Ribosomal protein L39 family protein 0.06 Orthogroups_2024-Update
GRMZM2G411764 No alias Ribosomal protein L39 family protein 0.03 Orthogroups_2024-Update
LOC_Os02g55370 No alias 60S ribosomal protein L39, putative, expressed 0.04 Orthogroups_2024-Update
LOC_Os06g08320 No alias 60S ribosomal protein L39, putative, expressed 0.02 Orthogroups_2024-Update
PSME_00038050-RA No alias (p51426|rl39_orysa : 108.0) 60S ribosomal protein L39 -... 0.08 Orthogroups_2024-Update
Potri.018G022100 No alias Ribosomal protein L39 family protein 0.07 Orthogroups_2024-Update
Pp1s104_75V6 No alias 60s ribosomal protein l39 0.08 Orthogroups_2024-Update
Pp1s89_150V6 No alias 60S ribosomal protein L39... 0.1 Orthogroups_2024-Update
Solyc12g010350 No alias 60S ribosomal protein L39 (AHRD V3.3 *** RL39_MAIZE) 0.12 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA 16Dec
CC GO:0005840 ribosome IEA 16Dec
BP GO:0006412 translation IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003746 translation elongation factor activity IEP Predicted GO
CC GO:0005742 mitochondrial outer membrane translocase complex IEP Predicted GO
CC GO:0005789 endoplasmic reticulum membrane IEP Predicted GO
BP GO:0006414 translational elongation IEP Predicted GO
BP GO:0006839 mitochondrial transport IEP Predicted GO
CC GO:0015934 large ribosomal subunit IEP Predicted GO
BP GO:0017038 protein import IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
BP GO:0030150 protein import into mitochondrial matrix IEP Predicted GO
BP GO:0033365 protein localization to organelle IEP Predicted GO
BP GO:0034613 cellular protein localization IEP Predicted GO
CC GO:0044391 ribosomal subunit IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044425 membrane part IEP Predicted GO
CC GO:0044432 endoplasmic reticulum part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
CC GO:0044455 mitochondrial membrane part IEP Predicted GO
BP GO:0044743 protein transmembrane import into intracellular organelle IEP Predicted GO
BP GO:0065002 intracellular protein transmembrane transport IEP Predicted GO
BP GO:0070585 protein localization to mitochondrion IEP Predicted GO
BP GO:0070727 cellular macromolecule localization IEP Predicted GO
BP GO:0071806 protein transmembrane transport IEP Predicted GO
BP GO:0072594 establishment of protein localization to organelle IEP Predicted GO
BP GO:0072655 establishment of protein localization to mitochondrion IEP Predicted GO
CC GO:0098798 mitochondrial protein complex IEP Predicted GO
CC GO:0098799 outer mitochondrial membrane protein complex IEP Predicted GO
BP GO:1990542 mitochondrial transmembrane transport IEP Predicted GO
InterPro domains Description Start Stop
IPR000077 Ribosomal_L39 62 102
No external refs found!