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  5. Seita.1G370900.1

Seita.1G370900.1


Description : methyltransferase component *(Nop1/fibrillarin) of snoRNP rRNA methylation complex


Gene families : OG_42_0002666 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002666_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.1G370900.1
Cluster HCAA Clusters: Cluster_45

Target Alias Description ECC score Gene Family Method Actions
171051 No alias fibrillarin 2 0.04 Orthogroups_2024-Update
A4A49_36833 No alias mediator of rna polymerase ii transcription subunit 36a 0.02 Orthogroups_2024-Update
At4g25630 No alias Mediator of RNA polymerase II transcription subunit 36a... 0.11 Orthogroups_2024-Update
Bradi1g32010 No alias fibrillarin 1 0.03 Orthogroups_2024-Update
Bradi3g55810 No alias fibrillarin 2 0.06 Orthogroups_2024-Update
Brara.A01555.1 No alias methyltransferase component *(Nop1/fibrillarin) of... 0.1 Orthogroups_2024-Update
Brara.H01568.1 No alias methyltransferase component *(Nop1/fibrillarin) of... 0.09 Orthogroups_2024-Update
Cre02.g077300 No alias fibrillarin 2 0.03 Orthogroups_2024-Update
Glyma.04G200700 No alias fibrillarin 2 0.05 Orthogroups_2024-Update
Glyma.06G164800 No alias fibrillarin 2 0.03 Orthogroups_2024-Update
Glyma.11G237200 No alias fibrillarin 2 0.08 Orthogroups_2024-Update
Glyma.18G020000 No alias fibrillarin 2 0.05 Orthogroups_2024-Update
HORVU6Hr1G091860.1 No alias methyltransferase component *(Nop1/fibrillarin) of... 0.05 Orthogroups_2024-Update
Kfl00029_0080 kfl00029_0080_v1.... (at4g25630 : 404.0) encodes a fibrillarin, a key... 0.05 Orthogroups_2024-Update
LOC_Os05g08360 No alias rRNA 2-O-methyltransferase fibrillarin 2, putative, expressed 0.04 Orthogroups_2024-Update
Mp2g12880.1 No alias methyltransferase component Nop1/fibrillarin of snoRNP... 0.02 Orthogroups_2024-Update
Potri.015G147500 No alias fibrillarin 1 0.04 Orthogroups_2024-Update
Pp1s177_5V6 No alias loc398434 protein 0.04 Orthogroups_2024-Update
Pp1s263_70V6 No alias loc398434 protein 0.03 Orthogroups_2024-Update
Pp1s54_67V6 No alias L73G19.10; fibrillarin 2 (FIB2) [Arabidopsis thaliana] 0.04 Orthogroups_2024-Update
Sobic.004G349700.1 No alias methyltransferase component *(Nop1/fibrillarin) of... 0.09 Orthogroups_2024-Update
Solyc03g025270 No alias fibrillarin 2 (AHRD V3.3 *** AT4G25630.1) 0.17 Orthogroups_2024-Update
Sopen03g004100 No alias Fibrillarin 0.12 Orthogroups_2024-Update
evm.model.contig_595.1 No alias (at5g52470 : 361.0) encodes a fibrillarin, a key... 0.03 Orthogroups_2024-Update
evm.model.tig00001049.16 No alias (at5g52470 : 336.0) encodes a fibrillarin, a key... 0.12 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA 16Dec
BP GO:0006364 rRNA processing IEA 16Dec
MF GO:0008168 methyltransferase activity IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Predicted GO
CC GO:0005730 nucleolus IEP Predicted GO
CC GO:0005737 cytoplasm IEP Predicted GO
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Predicted GO
MF GO:0008134 transcription factor binding IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
MF GO:0016859 cis-trans isomerase activity IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
InterPro domains Description Start Stop
IPR000692 Fibrillarin 73 298
No external refs found!