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  5. Seita.1G371200.1

Seita.1G371200.1


Description : putative silicon efflux transporter *(LSI2)


Gene families : OG_42_0001194 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001194_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.1G371200.1
Cluster HCAA Clusters: Cluster_145

Target Alias Description ECC score Gene Family Method Actions
148775 No alias Divalent ion symporter 0.03 Orthogroups_2024-Update
Bradi3g55840 No alias Divalent ion symporter 0.03 Orthogroups_2024-Update
GRMZM2G060742 No alias Divalent ion symporter 0.03 Orthogroups_2024-Update
Glyma.09G135000 No alias Divalent ion symporter 0.03 Orthogroups_2024-Update
Glyma.10G232600 No alias Divalent ion symporter 0.03 Orthogroups_2024-Update
HORVU6Hr1G092430.1 No alias putative silicon efflux transporter *(LSI2) 0.05 Orthogroups_2024-Update
Potri.015G146800 No alias Divalent ion symporter 0.03 Orthogroups_2024-Update
Pp1s155_46V6 No alias transmembrane expressed 0.01 Orthogroups_2024-Update
Seita.9G235900.1 No alias putative silicon efflux transporter *(LSI2) 0.03 Orthogroups_2024-Update
Sobic.004G350000.1 No alias putative silicon efflux transporter *(LSI2) 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0016020 membrane IEA 16Dec
BP GO:0055085 transmembrane transport IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP Predicted GO
BP GO:0000272 polysaccharide catabolic process IEP Predicted GO
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
MF GO:0003968 RNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0004061 arylformamidase activity IEP Predicted GO
MF GO:0005375 copper ion transmembrane transporter activity IEP Predicted GO
MF GO:0005506 iron ion binding IEP Predicted GO
BP GO:0006568 tryptophan metabolic process IEP Predicted GO
BP GO:0006569 tryptophan catabolic process IEP Predicted GO
BP GO:0006586 indolalkylamine metabolic process IEP Predicted GO
BP GO:0006825 copper ion transport IEP Predicted GO
BP GO:0009063 cellular amino acid catabolic process IEP Predicted GO
BP GO:0009074 aromatic amino acid family catabolic process IEP Predicted GO
BP GO:0009310 amine catabolic process IEP Predicted GO
MF GO:0015075 ion transmembrane transporter activity IEP Predicted GO
MF GO:0015095 magnesium ion transmembrane transporter activity IEP Predicted GO
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP Predicted GO
BP GO:0015693 magnesium ion transport IEP Predicted GO
BP GO:0016054 organic acid catabolic process IEP Predicted GO
MF GO:0016161 beta-amylase activity IEP Predicted GO
MF GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEP Predicted GO
BP GO:0019441 tryptophan catabolic process to kynurenine IEP Predicted GO
BP GO:0030001 metal ion transport IEP Predicted GO
BP GO:0035434 copper ion transmembrane transport IEP Predicted GO
BP GO:0042180 cellular ketone metabolic process IEP Predicted GO
BP GO:0042402 cellular biogenic amine catabolic process IEP Predicted GO
BP GO:0042430 indole-containing compound metabolic process IEP Predicted GO
BP GO:0042436 indole-containing compound catabolic process IEP Predicted GO
BP GO:0042537 benzene-containing compound metabolic process IEP Predicted GO
BP GO:0046218 indolalkylamine catabolic process IEP Predicted GO
BP GO:0046395 carboxylic acid catabolic process IEP Predicted GO
MF GO:0046873 metal ion transmembrane transporter activity IEP Predicted GO
MF GO:0046915 transition metal ion transmembrane transporter activity IEP Predicted GO
BP GO:0070189 kynurenine metabolic process IEP Predicted GO
BP GO:0070838 divalent metal ion transport IEP Predicted GO
BP GO:0072511 divalent inorganic cation transport IEP Predicted GO
BP GO:1901606 alpha-amino acid catabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR004680 Cit_transptr-like_dom 27 470
No external refs found!