Seita.2G023300.1

Description : chromatin remodeling factor *(DDM1)

Gene families : OG_42_0000148 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000148_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria italica: Seita.2G023300.1
Cluster	HCAA Clusters: Cluster_136

Target	Alias	Description	ECC score	Gene Family Method
A4A49_40832	No alias	atp-dependent dna helicase ddm1	0.05	Orthogroups_2024-Update
Cre03.g158550	No alias	chromatin remodeling factor CHD3 (PICKLE)	0.01	Orthogroups_2024-Update
Kfl00125_0020	kfl00125_0020_v1....	(at2g13370 : 403.0) chromatin remodeling 5 (CHR5);...	0.02	Orthogroups_2024-Update
Mp5g24460.1	No alias	chromatin remodeling factor (Chd3/Mi-2)	0.02	Orthogroups_2024-Update
Solyc02g062780	No alias	chromatin remodeling 1 (AHRD V3.3 *** AT5G66750.1)	0.04	Orthogroups_2024-Update
Solyc06g054560	No alias	RNA helicase DEAH-box19	0.02	Orthogroups_2024-Update
Sopen06g019630	No alias	SNF2 family N-terminal domain	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	16Dec
MF	GO:0008144	drug binding	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0000724	double-strand break repair via homologous recombination	IEP	Predicted GO
BP	GO:0000725	recombinational repair	IEP	Predicted GO
CC	GO:0000808	origin recognition complex	IEP	Predicted GO
MF	GO:0003676	nucleic acid binding	IEP	Predicted GO
MF	GO:0003677	DNA binding	IEP	Predicted GO
CC	GO:0005664	nuclear origin of replication recognition complex	IEP	Predicted GO
BP	GO:0006259	DNA metabolic process	IEP	Predicted GO
BP	GO:0006260	DNA replication	IEP	Predicted GO
BP	GO:0006302	double-strand break repair	IEP	Predicted GO
BP	GO:0006310	DNA recombination	IEP	Predicted GO
CC	GO:0044427	chromosomal part	IEP	Predicted GO
CC	GO:0044454	nuclear chromosome part	IEP	Predicted GO
BP	GO:0090304	nucleic acid metabolic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	574	680
IPR000330	SNF2_N	245	544

External Links

No external refs found!