1. Home
  2. Species
  3. Setaria italica
  4. Sequence
  5. Seita.2G043400.1

Seita.2G043400.1


Description : component *(eIF3i) of eIF3 mRNA-to-PIC binding complex


Gene families : OG_42_0003958 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003958_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.2G043400.1
Cluster HCAA Clusters: Cluster_75

Target Alias Description ECC score Gene Family Method Actions
Bradi4g14097 No alias Transducin/WD40 repeat-like superfamily protein 0.06 Orthogroups_2024-Update
GRMZM2G028834 No alias Transducin/WD40 repeat-like superfamily protein 0.08 Orthogroups_2024-Update
Glyma.09G234100 No alias Transducin/WD40 repeat-like superfamily protein 0.07 Orthogroups_2024-Update
HORVU4Hr1G040280.4 No alias component *(eIF3i) of eIF3 mRNA-to-PIC binding complex 0.13 Orthogroups_2024-Update
LOC_Os05g16660 No alias WD domain, G-beta repeat domain containing protein, expressed 0.03 Orthogroups_2024-Update
LOC_Os08g21660 No alias WD domain, G-beta repeat domain containing protein, expressed 0.04 Orthogroups_2024-Update
MA_10429304g0010 No alias (at2g46280 : 310.0) Encodes a homolog of mammalian... 0.05 Orthogroups_2024-Update
Potri.008G141400 No alias Transducin/WD40 repeat-like superfamily protein 0.05 Orthogroups_2024-Update
Potri.010G100100 No alias Transducin/WD40 repeat-like superfamily protein 0.06 Orthogroups_2024-Update
Pp1s65_136V6 No alias eukaryotic translation initiation factor 3 delta subunit 0.02 Orthogroups_2024-Update
Sobic.002G044000.1 No alias component *(eIF3i) of eIF3 mRNA-to-PIC binding complex 0.15 Orthogroups_2024-Update
Solyc11g017070 No alias Eukaryotic translation initiation factor 3 subunit I... 0.11 Orthogroups_2024-Update
Sopen11g009060 No alias WD domain, G-beta repeat 0.12 Orthogroups_2024-Update
evm.model.contig_2181.2 No alias (at2g46290 : 281.0) Transducin/WD40 repeat-like... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0003746 translation elongation factor activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006414 translational elongation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
MF GO:0008097 5S rRNA binding IEP Predicted GO
BP GO:0008150 biological_process IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR001680 WD40_repeat 143 174
IPR001680 WD40_repeat 43 80
IPR001680 WD40_repeat 283 314
IPR001680 WD40_repeat 188 219
No external refs found!