1. Home
  2. Species
  3. Setaria italica
  4. Sequence
  5. Seita.2G044800.1

Seita.2G044800.1


Description : EC_2.7 transferase transferring phosphorus-containing group & phosphorolytic exoribonuclease *(PNP)


Gene families : OG_42_0002046 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002046_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.2G044800.1
Cluster HCAA Clusters: Cluster_34

Target Alias Description ECC score Gene Family Method Actions
84724 No alias polyribonucleotide nucleotidyltransferase, putative 0.02 Orthogroups_2024-Update
Bradi1g56280 No alias polyribonucleotide nucleotidyltransferase, putative 0.13 Orthogroups_2024-Update
Kfl00059_0100 kfl00059_0100_v1.1 (at3g03710 : 796.0) Encodes a chloroplast polynucleotide... 0.02 Orthogroups_2024-Update
LOC_Os02g40460 No alias S1 RNA binding domain containing protein, expressed 0.03 Orthogroups_2024-Update
Potri.013G065700 No alias polyribonucleotide nucleotidyltransferase, putative 0.03 Orthogroups_2024-Update
Pp1s307_19V6 No alias polyribonucleotide nucleotidyltransferase 0.04 Orthogroups_2024-Update
Sobic.002G045700.1 No alias EC_2.7 transferase transferring phosphorus-containing... 0.11 Orthogroups_2024-Update
Solyc08g066120 No alias polyribonucleotide nucleotidyltransferase (AHRD V3.3 ***... 0.05 Orthogroups_2024-Update
Solyc08g066140 No alias Polyribonucleotide nucleotidyltransferase (AHRD V3.3 *-*... 0.03 Orthogroups_2024-Update
Sopen08g019820 No alias 3' exoribonuclease family, domain 1 0.02 Orthogroups_2024-Update
evm.model.tig00021073.40 No alias (at5g14580 : 307.0) polyribonucleotide... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA 16Dec
MF GO:0003723 RNA binding IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Predicted GO
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Predicted GO
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0004518 nuclease activity IEP Predicted GO
MF GO:0004832 valine-tRNA ligase activity IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
CC GO:0005669 transcription factor TFIID complex IEP Predicted GO
BP GO:0006401 RNA catabolic process IEP Predicted GO
BP GO:0006402 mRNA catabolic process IEP Predicted GO
BP GO:0006438 valyl-tRNA aminoacylation IEP Predicted GO
BP GO:0006801 superoxide metabolic process IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
MF GO:0019842 vitamin binding IEP Predicted GO
MF GO:0030976 thiamine pyrophosphate binding IEP Predicted GO
MF GO:0031072 heat shock protein binding IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
BP GO:0072593 reactive oxygen species metabolic process IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
CC GO:0090575 RNA polymerase II transcription factor complex IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
MF GO:2001070 starch binding IEP Predicted GO
InterPro domains Description Start Stop
IPR004088 KH_dom_type_1 686 742
IPR015847 ExoRNase_PH_dom2 223 283
IPR003029 S1_domain 758 819
IPR001247 ExoRNase_PH_dom1 445 579
IPR001247 ExoRNase_PH_dom1 88 218
No external refs found!