1. Home
  2. Species
  3. Setaria italica
  4. Sequence
  5. Seita.2G053300.1

Seita.2G053300.1


Description : LHC-related protein *(ELIP)


Gene families : OG_42_0000421 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000421_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.2G053300.1
Cluster HCAA Clusters: Cluster_40

Target Alias Description ECC score Gene Family Method Actions
A4A49_24316 No alias early light-induced protein 1, chloroplastic 0.04 Orthogroups_2024-Update
A4A49_27530 No alias early light-induced protein 1, chloroplastic 0.03 Orthogroups_2024-Update
Bradi1g55560 No alias Chlorophyll A-B binding family protein 0.05 Orthogroups_2024-Update
Bradi1g55570 No alias Chlorophyll A-B binding family protein 0.03 Orthogroups_2024-Update
Bradi1g55600 No alias Chlorophyll A-B binding family protein 0.05 Orthogroups_2024-Update
Bradi1g55610 No alias Chlorophyll A-B binding family protein 0.04 Orthogroups_2024-Update
Bradi1g55620 No alias Chlorophyll A-B binding family protein 0.05 Orthogroups_2024-Update
Cre08.g384650 No alias Chlorophyll A-B binding family protein 0.04 Orthogroups_2024-Update
Cre09.g393173 No alias Chlorophyll A-B binding family protein 0.01 Orthogroups_2024-Update
Cre09.g394325 No alias Chlorophyll A-B binding family protein 0.02 Orthogroups_2024-Update
Cre14.g626750 No alias Chlorophyll A-B binding family protein 0.03 Orthogroups_2024-Update
Cre16.g679250 No alias Chlorophyll A-B binding family protein 0.02 Orthogroups_2024-Update
Glyma.10G243800 No alias Chlorophyll A-B binding family protein 0.06 Orthogroups_2024-Update
Glyma.20G150600 No alias Chlorophyll A-B binding family protein 0.08 Orthogroups_2024-Update
HORVU0Hr1G008960.2 No alias LHC-related protein *(ELIP) 0.07 Orthogroups_2024-Update
HORVU0Hr1G013030.2 No alias LHC-related protein *(ELIP) 0.05 Orthogroups_2024-Update
HORVU0Hr1G023360.2 No alias LHC-related protein *(ELIP) 0.08 Orthogroups_2024-Update
HORVU0Hr1G031930.1 No alias LHC-related protein *(ELIP) 0.03 Orthogroups_2024-Update
HORVU0Hr1G038220.1 No alias LHC-related protein *(ELIP) 0.06 Orthogroups_2024-Update
HORVU1Hr1G067070.3 No alias LHC-related protein *(ELIP) 0.04 Orthogroups_2024-Update
HORVU1Hr1G067080.3 No alias LHC-related protein *(ELIP) 0.08 Orthogroups_2024-Update
HORVU1Hr1G087740.1 No alias LHC-related protein *(ELIP) 0.07 Orthogroups_2024-Update
HORVU4Hr1G063190.1 No alias LHC-related protein *(ELIP) 0.06 Orthogroups_2024-Update
HORVU4Hr1G066740.1 No alias LHC-related protein *(ELIP) 0.07 Orthogroups_2024-Update
HORVU4Hr1G066800.8 No alias LHC-related protein *(ELIP) 0.07 Orthogroups_2024-Update
HORVU4Hr1G066810.7 No alias LHC-related protein *(ELIP) 0.07 Orthogroups_2024-Update
HORVU5Hr1G000620.2 No alias LHC-related protein *(ELIP) 0.07 Orthogroups_2024-Update
HORVU5Hr1G063570.1 No alias LHC-related protein *(ELIP) 0.05 Orthogroups_2024-Update
HORVU5Hr1G063590.1 No alias LHC-related protein *(ELIP) 0.07 Orthogroups_2024-Update
HORVU5Hr1G063620.1 No alias LHC-related protein *(ELIP) 0.08 Orthogroups_2024-Update
HORVU5Hr1G063630.3 No alias LHC-related protein *(ELIP) 0.07 Orthogroups_2024-Update
HORVU5Hr1G063650.1 No alias LHC-related protein *(ELIP) 0.07 Orthogroups_2024-Update
HORVU5Hr1G063660.1 No alias LHC-related protein *(ELIP) 0.07 Orthogroups_2024-Update
HORVU5Hr1G063670.1 No alias LHC-related protein *(ELIP) 0.04 Orthogroups_2024-Update
Kfl00023_0130 kfl00023_0130_v1.1 no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
Kfl00052_0260 kfl00052_0260_v1.1 no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
Kfl00073_0090 kfl00073_0090_v1.1 (at4g14690 : 81.6) Encodes an early light-induced... 0.02 Orthogroups_2024-Update
MA_10432802g0010 No alias (p11432|eli_pea : 172.0) Early light-induced protein,... 0.04 Orthogroups_2024-Update
Mp6g14520.1 No alias ELIP LHC-related protein 0.03 Orthogroups_2024-Update
PSME_00007989-RA No alias (at3g22840 : 149.0) Encodes an early light-inducible... 0.03 Orthogroups_2024-Update
PSME_00007990-RA No alias (at3g22840 : 162.0) Encodes an early light-inducible... 0.04 Orthogroups_2024-Update
PSME_00018672-RA No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
Pp1s78_96V6 No alias elip1.8 gene for putative early light-induced protein ELIP1.8 0.01 Orthogroups_2024-Update
Sobic.002G052000.2 No alias LHC-related protein *(ELIP) 0.08 Orthogroups_2024-Update
Sobic.002G052100.1 No alias LHC-related protein *(ELIP) 0.08 Orthogroups_2024-Update
Solyc09g082690 No alias superoxide dismutase 0.06 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
BP GO:0000272 polysaccharide catabolic process IEP Predicted GO
MF GO:0003824 catalytic activity IEP Predicted GO
MF GO:0003989 acetyl-CoA carboxylase activity IEP Predicted GO
MF GO:0004672 protein kinase activity IEP Predicted GO
BP GO:0006464 cellular protein modification process IEP Predicted GO
BP GO:0006468 protein phosphorylation IEP Predicted GO
BP GO:0006629 lipid metabolic process IEP Predicted GO
BP GO:0006720 isoprenoid metabolic process IEP Predicted GO
BP GO:0006729 tetrahydrobiopterin biosynthetic process IEP Predicted GO
MF GO:0008124 4-alpha-hydroxytetrahydrobiopterin dehydratase activity IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
BP GO:0008299 isoprenoid biosynthetic process IEP Predicted GO
BP GO:0008610 lipid biosynthetic process IEP Predicted GO
MF GO:0010181 FMN binding IEP Predicted GO
MF GO:0016161 beta-amylase activity IEP Predicted GO
MF GO:0016421 CoA carboxylase activity IEP Predicted GO
MF GO:0016791 phosphatase activity IEP Predicted GO
MF GO:0016853 isomerase activity IEP Predicted GO
MF GO:0016872 intramolecular lyase activity IEP Predicted GO
MF GO:0016885 ligase activity, forming carbon-carbon bonds IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
BP GO:0019751 polyol metabolic process IEP Predicted GO
MF GO:0019842 vitamin binding IEP Predicted GO
MF GO:0030170 pyridoxal phosphate binding IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
BP GO:0034311 diol metabolic process IEP Predicted GO
BP GO:0034312 diol biosynthetic process IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
BP GO:0036211 protein modification process IEP Predicted GO
BP GO:0042558 pteridine-containing compound metabolic process IEP Predicted GO
BP GO:0042559 pteridine-containing compound biosynthetic process IEP Predicted GO
MF GO:0042578 phosphoric ester hydrolase activity IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
BP GO:0044255 cellular lipid metabolic process IEP Predicted GO
BP GO:0046146 tetrahydrobiopterin metabolic process IEP Predicted GO
BP GO:0046165 alcohol biosynthetic process IEP Predicted GO
BP GO:0046173 polyol biosynthetic process IEP Predicted GO
MF GO:0048037 cofactor binding IEP Predicted GO
MF GO:0050662 coenzyme binding IEP Predicted GO
MF GO:0070279 vitamin B6 binding IEP Predicted GO
MF GO:0070402 NADPH binding IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
MF GO:0140096 catalytic activity, acting on a protein IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
BP GO:1901617 organic hydroxy compound biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR022796 Chloroa_b-bind 75 138
No external refs found!