Seita.2G055300.1

Description : component *(uL4) of large ribosomal-subunit (LSU) proteome

Gene families : OG_42_0001916 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001916_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria italica: Seita.2G055300.1
Cluster	HCAA Clusters: Cluster_85

Target	Alias	Description	ECC score	Gene Family Method
166994	No alias	Ribosomal protein L4/L1 family	0.15	Orthogroups_2024-Update
At3g09630	No alias	60S ribosomal protein L4-1...	0.04	Orthogroups_2024-Update
Bradi1g05510	No alias	Ribosomal protein L4/L1 family	0.26	Orthogroups_2024-Update
Bradi1g55510	No alias	Ribosomal protein L4/L1 family	0.29	Orthogroups_2024-Update
Brara.A03522.1	No alias	component *(uL4) of large ribosomal-subunit (LSU) proteome	0.23	Orthogroups_2024-Update
Brara.C00088.1	No alias	component *(uL4) of large ribosomal-subunit (LSU) proteome	0.13	Orthogroups_2024-Update
Brara.E03076.1	No alias	component *(uL4) of large ribosomal-subunit (LSU) proteome	0.21	Orthogroups_2024-Update
Brara.J02849.1	No alias	component *(uL4) of large ribosomal-subunit (LSU) proteome	0.25	Orthogroups_2024-Update
Cre09.g397697	No alias	Ribosomal protein L4/L1 family	0.09	Orthogroups_2024-Update
GRMZM2G007695	No alias	Ribosomal protein L4/L1 family	0.15	Orthogroups_2024-Update
GRMZM2G100403	No alias	Ribosomal protein L4/L1 family	0.14	Orthogroups_2024-Update
Glyma.03G177400	No alias	Ribosomal protein L4/L1 family	0.06	Orthogroups_2024-Update
Glyma.10G048600	No alias	Ribosomal protein L4/L1 family	0.19	Orthogroups_2024-Update
Glyma.13G136400	No alias	Ribosomal protein L4/L1 family	0.22	Orthogroups_2024-Update
HORVU4Hr1G075710.1	No alias	component *(uL4) of large ribosomal-subunit (LSU) proteome	0.16	Orthogroups_2024-Update
HORVU5Hr1G105870.1	No alias	component *(uL4) of large ribosomal-subunit (LSU) proteome	0.13	Orthogroups_2024-Update
Kfl00456_0100	kfl00456_0100_v1.1	(at3g09630 : 489.0) Ribosomal protein L4/L1 family;...	0.09	Orthogroups_2024-Update
Mp4g20310.1	No alias	component RPL4 of LSU proteome component	0.1	Orthogroups_2024-Update
PSME_00003145-RA	No alias	(at3g09630 : 579.0) Ribosomal protein L4/L1 family;...	0.02	Orthogroups_2024-Update
PSME_00003150-RA	No alias	(at3g09630 : 531.0) Ribosomal protein L4/L1 family;...	0.04	Orthogroups_2024-Update
Potri.016G084400	No alias	Ribosomal protein L4/L1 family	0.08	Orthogroups_2024-Update
Potri.T159800	No alias	Ribosomal protein L4/L1 family	0.06	Orthogroups_2024-Update
Pp1s10_102V6	No alias	60s ribosomal protein l4	0.1	Orthogroups_2024-Update
Pp1s10_369V6	No alias	60s ribosomal protein l4	0.03	Orthogroups_2024-Update
Pp1s18_113V6	No alias	60s ribosomal protein l4	0.1	Orthogroups_2024-Update
Pp1s40_305V6	No alias	60s ribosomal protein l4	0.15	Orthogroups_2024-Update
Sobic.001G057300.1	No alias	component *(uL4) of large ribosomal-subunit (LSU) proteome	0.27	Orthogroups_2024-Update
Sobic.002G054000.1	No alias	component *(uL4) of large ribosomal-subunit (LSU) proteome	0.32	Orthogroups_2024-Update
Solyc09g007250	No alias	60S ribosomal protein L4 (AHRD V3.3 *** RL4_PRUAR)	0.26	Orthogroups_2024-Update
Solyc10g084350	No alias	60S ribosomal L4 (AHRD V3.3 *** A0A0B0NGW3_GOSAR)	0.16	Orthogroups_2024-Update
Solyc10g086010	No alias	60S ribosomal L4 (AHRD V3.3 *** A0A0B0NGW3_GOSAR)	0.22	Orthogroups_2024-Update
Sopen09g002120	No alias	Ribosomal protein L4/L1 family	0.17	Orthogroups_2024-Update
Sopen10g033800	No alias	Ribosomal protein L4/L1 family	0.27	Orthogroups_2024-Update
Sopen10g035380	No alias	Ribosomal protein L4/L1 family	0.21	Orthogroups_2024-Update
evm.model.contig_2049.5	No alias	(at3g09630 : 394.0) Ribosomal protein L4/L1 family;...	0.16	Orthogroups_2024-Update
evm.model.tig00022075.53	No alias	(at3g09630 : 404.0) Ribosomal protein L4/L1 family;...	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	16Dec
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	16Dec
BP	GO:0006412	translation	IEA	16Dec
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	Predicted GO
MF	GO:0001882	nucleoside binding	IEP	Predicted GO
MF	GO:0001883	purine nucleoside binding	IEP	Predicted GO
MF	GO:0003676	nucleic acid binding	IEP	Predicted GO
MF	GO:0003723	RNA binding	IEP	Predicted GO
MF	GO:0003746	translation elongation factor activity	IEP	Predicted GO
MF	GO:0003924	GTPase activity	IEP	Predicted GO
MF	GO:0004809	tRNA (guanine-N2-)-methyltransferase activity	IEP	Predicted GO
MF	GO:0005525	GTP binding	IEP	Predicted GO
CC	GO:0005634	nucleus	IEP	Predicted GO
CC	GO:0005852	eukaryotic translation initiation factor 3 complex	IEP	Predicted GO
BP	GO:0006334	nucleosome assembly	IEP	Predicted GO
BP	GO:0006364	rRNA processing	IEP	Predicted GO
BP	GO:0006396	RNA processing	IEP	Predicted GO
BP	GO:0006414	translational elongation	IEP	Predicted GO
BP	GO:0006448	regulation of translational elongation	IEP	Predicted GO
MF	GO:0008135	translation factor activity, RNA binding	IEP	Predicted GO
MF	GO:0008175	tRNA methyltransferase activity	IEP	Predicted GO
BP	GO:0016070	RNA metabolic process	IEP	Predicted GO
BP	GO:0016072	rRNA metabolic process	IEP	Predicted GO
MF	GO:0016423	tRNA (guanine) methyltransferase activity	IEP	Predicted GO
BP	GO:0017182	peptidyl-diphthamide metabolic process	IEP	Predicted GO
BP	GO:0017183	peptidyl-diphthamide biosynthetic process from peptidyl-histidine	IEP	Predicted GO
BP	GO:0018202	peptidyl-histidine modification	IEP	Predicted GO
MF	GO:0019001	guanyl nucleotide binding	IEP	Predicted GO
MF	GO:0019843	rRNA binding	IEP	Predicted GO
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Predicted GO
BP	GO:0030490	maturation of SSU-rRNA	IEP	Predicted GO
MF	GO:0030515	snoRNA binding	IEP	Predicted GO
MF	GO:0032549	ribonucleoside binding	IEP	Predicted GO
MF	GO:0032550	purine ribonucleoside binding	IEP	Predicted GO
MF	GO:0032561	guanyl ribonucleotide binding	IEP	Predicted GO
BP	GO:0034470	ncRNA processing	IEP	Predicted GO
BP	GO:0034660	ncRNA metabolic process	IEP	Predicted GO
BP	GO:0034728	nucleosome organization	IEP	Predicted GO
BP	GO:0042254	ribosome biogenesis	IEP	Predicted GO
CC	GO:0043227	membrane-bounded organelle	IEP	Predicted GO
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	Predicted GO
BP	GO:0090304	nucleic acid metabolic process	IEP	Predicted GO
MF	GO:0090560	2-(3-amino-3-carboxypropyl)histidine synthase activity	IEP	Predicted GO
MF	GO:0097159	organic cyclic compound binding	IEP	Predicted GO
BP	GO:1900247	regulation of cytoplasmic translational elongation	IEP	Predicted GO
MF	GO:1901363	heterocyclic compound binding	IEP	Predicted GO
BP	GO:2000765	regulation of cytoplasmic translation	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR002136	Ribosomal_L4/L1e	28	266
IPR025755	Ribos_L4_C_dom	279	351

External Links

No external refs found!

Seita.2G055300.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation