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  5. Seita.2G068700.1

Seita.2G068700.1


Description : RNA editing factor *(CRR28)


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.2G068700.1
Cluster HCAA Clusters: Cluster_144

Target Alias Description ECC score Gene Family Method Actions
A4A49_17130 No alias pentatricopeptide repeat-containing protein dot4, chloroplastic 0.02 Orthogroups_2024-Update
AC203841.3_FG002 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
At1g56570 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Orthogroups_2024-Update
At3g02010 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Orthogroups_2024-Update
At3g46790 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.02 Orthogroups_2024-Update
At4g02750 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 Orthogroups_2024-Update
At4g37380 No alias Pentatricopeptide repeat-containing protein ELI1,... 0.03 Orthogroups_2024-Update
Bradi1g56040 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Bradi1g75980 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Bradi2g06450 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Bradi2g15700 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Bradi2g62320 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Bradi3g51740 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 Orthogroups_2024-Update
Brara.B03211.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Brara.G00298.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.H03084.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Brara.I02594.1 No alias Unknown function 0.01 Orthogroups_2024-Update
GRMZM2G073017 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G129783 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
GRMZM2G161368 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 Orthogroups_2024-Update
GRMZM2G168378 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G380195 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G440349 No alias pentatricopeptide (PPR) repeat-containing protein 0.02 Orthogroups_2024-Update
GRMZM5G862936 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.01G159100 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.03G189000 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.04G129100 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Glyma.06G206900 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
Glyma.07G068600 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Glyma.07G173900 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.09G283000 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Glyma.12G183600 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.15G059000 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.16G049800 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Glyma.18G085900 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
HORVU1Hr1G090780.5 No alias RNA editing factor *(ECB2/VAC1) 0.04 Orthogroups_2024-Update
HORVU3Hr1G026110.4 No alias RNA editing factor *(DOT4) 0.04 Orthogroups_2024-Update
HORVU3Hr1G085770.2 No alias RNA editing factor *(CRR2) 0.03 Orthogroups_2024-Update
HORVU5Hr1G040610.4 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU6Hr1G010120.6 No alias Unknown function 0.02 Orthogroups_2024-Update
MA_10214098g0010 No alias (at4g33170 : 616.0) Tetratricopeptide repeat (TPR)-like... 0.02 Orthogroups_2024-Update
MA_10429043g0020 No alias (at4g18750 : 616.0) Encodes a pentatricopeptide (PPR)... 0.02 Orthogroups_2024-Update
MA_136326g0010 No alias (at5g09950 : 662.0) Tetratricopeptide repeat (TPR)-like... 0.02 Orthogroups_2024-Update
MA_140591g0010 No alias (at1g11290 : 675.0) Pentatricopeptide Repeat Protein... 0.02 Orthogroups_2024-Update
MA_16457g0010 No alias (at2g22070 : 558.0) pentatricopeptide (PPR)... 0.02 Orthogroups_2024-Update
MA_25515g0010 No alias (at4g13650 : 660.0) Pentatricopeptide repeat (PPR)... 0.02 Orthogroups_2024-Update
MA_462184g0010 No alias (at4g13650 : 568.0) Pentatricopeptide repeat (PPR)... 0.02 Orthogroups_2024-Update
MA_5481g0010 No alias (at4g18750 : 690.0) Encodes a pentatricopeptide (PPR)... 0.04 Orthogroups_2024-Update
MA_64083g0010 No alias (at1g11290 : 632.0) Pentatricopeptide Repeat Protein... 0.02 Orthogroups_2024-Update
MA_7907g0020 No alias (at3g57430 : 717.0) Encodes a chloroplast RNA editing... 0.03 Orthogroups_2024-Update
PSME_00002641-RA No alias (at1g11290 : 548.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
PSME_00005903-RA No alias (at2g22070 : 612.0) pentatricopeptide (PPR)... 0.02 Orthogroups_2024-Update
PSME_00036103-RA No alias (at2g13600 : 422.0) Pentatricopeptide repeat (PPR)... 0.02 Orthogroups_2024-Update
PSME_00048766-RA No alias (at4g02750 : 577.0) Tetratricopeptide repeat (TPR)-like... 0.01 Orthogroups_2024-Update
Potri.004G205900 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Potri.004G208000 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Potri.005G019400 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.010G086200 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Potri.013G044700 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Potri.013G058900 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Pp1s103_35V6 No alias MZB10.7; pentatricopeptide (PPR) repeat-containing... 0.01 Orthogroups_2024-Update
Pp1s169_110V6 No alias T12J13.14; pentatricopeptide (PPR) repeat-containing... 0.01 Orthogroups_2024-Update
Pp1s543_6V6 No alias hypothetical protein [Oryza sativa (japonica cultivar-group)] 0.01 Orthogroups_2024-Update
Sobic.002G007000.2 No alias RNA editing factor *(ELI1) 0.09 Orthogroups_2024-Update
Sobic.002G048200.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.002G200500.3 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.003G223000.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Sobic.004G246800.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.006G122100.2 No alias Unknown function 0.06 Orthogroups_2024-Update
Sobic.006G153300.2 No alias RNA editing factor *(MEF21) 0.01 Orthogroups_2024-Update
Sobic.009G079400.1 No alias RNA editing factor *(ECD1) 0.05 Orthogroups_2024-Update
Sobic.009G241200.3 No alias RNA editing factor *(ECB2/VAC1) 0.03 Orthogroups_2024-Update
Sobic.009G250700.1 No alias Unknown function 0.06 Orthogroups_2024-Update
Sobic.010G153600.1 No alias Unknown function 0.07 Orthogroups_2024-Update
Solyc01g007850 No alias Pentatricopeptide repeat superfamily protein, putative... 0.04 Orthogroups_2024-Update
Solyc04g063270 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.03 Orthogroups_2024-Update
Solyc05g006800 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.04 Orthogroups_2024-Update
Solyc11g008940 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Sopen01g039430 No alias PPR repeat family 0.03 Orthogroups_2024-Update
Sopen01g041280 No alias PPR repeat family 0.02 Orthogroups_2024-Update
Sopen02g024180 No alias PPR repeat family 0.02 Orthogroups_2024-Update
Sopen02g025050 No alias PPR repeat family 0.02 Orthogroups_2024-Update
Sopen05g018650 No alias PPR repeat family 0.02 Orthogroups_2024-Update
Sopen07g004410 No alias PPR repeat family 0.03 Orthogroups_2024-Update
Sopen09g033130 No alias PPR repeat family 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA 16Dec
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Type GO Term Name Evidence Source
CC GO:0000781 chromosome, telomeric region IEP Predicted GO
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003885 D-arabinono-1,4-lactone oxidase activity IEP Predicted GO
MF GO:0004312 fatty acid synthase activity IEP Predicted GO
MF GO:0004315 3-oxoacyl-[acyl-carrier-protein] synthase activity IEP Predicted GO
MF GO:0004427 inorganic diphosphatase activity IEP Predicted GO
MF GO:0004609 phosphatidylserine decarboxylase activity IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
MF GO:0009678 hydrogen-translocating pyrophosphatase activity IEP Predicted GO
MF GO:0009982 pseudouridine synthase activity IEP Predicted GO
MF GO:0016462 pyrophosphatase activity IEP Predicted GO
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Predicted GO
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Predicted GO
MF GO:0016887 ATPase activity IEP Predicted GO
MF GO:0016899 oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor IEP Predicted GO
MF GO:0017111 nucleoside-triphosphatase activity IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
CC GO:0098687 chromosomal region IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
MF GO:2001070 starch binding IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 138 166
IPR002885 Pentatricopeptide_repeat 225 250
IPR002885 Pentatricopeptide_repeat 108 133
IPR002885 Pentatricopeptide_repeat 326 350
IPR032867 DYW_dom 469 562
IPR002885 Pentatricopeptide_repeat 251 298
No external refs found!