Seita.2G079700.1

Description : component *(uS5) of small ribosomal-subunit (SSU) proteome

Gene families : OG_42_0002117 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002117_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria italica: Seita.2G079700.1
Cluster	HCAA Clusters: Cluster_85

Target	Alias	Description	ECC score	Gene Family Method
67484	No alias	Ribosomal protein S5 family protein	0.19	Orthogroups_2024-Update
A4A49_17312	No alias	40s ribosomal protein s2-4	0.15	Orthogroups_2024-Update
AC210013.4_FG019	No alias	Ribosomal protein S5 family protein	0.19	Orthogroups_2024-Update
At1g58380	No alias	At1g59359 [Source:UniProtKB/TrEMBL;Acc:G1JSI6]	0.08	Orthogroups_2024-Update
At3g57490	No alias	40S ribosomal protein S2-4...	0.07	Orthogroups_2024-Update
Bradi1g04660	No alias	Ribosomal protein S5 family protein	0.11	Orthogroups_2024-Update
Bradi1g54270	No alias	Ribosomal protein S5 family protein	0.15	Orthogroups_2024-Update
Brara.A02366.1	No alias	component *(uS5) of small ribosomal-subunit (SSU) proteome	0.22	Orthogroups_2024-Update
Brara.C02137.1	No alias	component *(uS5) of small ribosomal-subunit (SSU) proteome	0.26	Orthogroups_2024-Update
Brara.E00249.1	No alias	component *(uS5) of small ribosomal-subunit (SSU) proteome	0.26	Orthogroups_2024-Update
Cre01.g039250	No alias	Ribosomal protein S5 family protein	0.05	Orthogroups_2024-Update
GRMZM2G092663	No alias	Ribosomal protein S5 family protein	0.08	Orthogroups_2024-Update
Glyma.02G085300	No alias	Ribosomal protein S5 family protein	0.15	Orthogroups_2024-Update
Glyma.05G239000	No alias	Ribosomal protein S5 family protein	0.08	Orthogroups_2024-Update
Glyma.11G019500	No alias	Ribosomal protein S5 family protein	0.03	Orthogroups_2024-Update
HORVU3Hr1G086050.2	No alias	component *(uS5) of small ribosomal-subunit (SSU) proteome	0.14	Orthogroups_2024-Update
HORVU5Hr1G109910.2	No alias	component *(uS5) of small ribosomal-subunit (SSU) proteome	0.13	Orthogroups_2024-Update
Kfl00142_0100	kfl00142_0100_v1.1	(at3g57490 : 392.0) Ribosomal protein S5 family protein;...	0.03	Orthogroups_2024-Update
LOC_Os03g59310	No alias	ribosomal protein, putative, expressed	0.04	Orthogroups_2024-Update
LOC_Os07g10660	No alias	ribosomal protein, putative, expressed	0.03	Orthogroups_2024-Update
Mp5g04380.1	No alias	component RPS2 of SSU proteome	0.05	Orthogroups_2024-Update
Mp5g05010.1	No alias	component RPS2 of SSU proteome	0.19	Orthogroups_2024-Update
Mp5g15970.1	No alias	component RPS2 of SSU proteome	0.19	Orthogroups_2024-Update
PSME_00012533-RA	No alias	(at3g57490 : 398.0) Ribosomal protein S5 family protein;...	0.04	Orthogroups_2024-Update
PSME_00031543-RA	No alias	(at3g57490 : 396.0) Ribosomal protein S5 family protein;...	0.05	Orthogroups_2024-Update
Potri.001G256800	No alias	Ribosomal protein S5 family protein	0.03	Orthogroups_2024-Update
Potri.006G052400	No alias	Ribosomal protein S5 family protein	0.07	Orthogroups_2024-Update
Pp1s10_190V6	No alias	40s ribosomal protein	0.16	Orthogroups_2024-Update
Pp1s274_5V6	No alias	40s ribosomal protein	0.17	Orthogroups_2024-Update
Pp1s400_15V6	No alias	40s ribosomal protein	0.21	Orthogroups_2024-Update
Sobic.001G046100.1	No alias	component *(uS5) of small ribosomal-subunit (SSU) proteome	0.29	Orthogroups_2024-Update
Sobic.001G046300.1	No alias	component *(uS5) of small ribosomal-subunit (SSU) proteome	0.4	Orthogroups_2024-Update
Solyc04g063290	No alias	40S ribosomal protein S2 (AHRD V3.3 *** K7WJZ4_SOLTU)	0.26	Orthogroups_2024-Update
Solyc04g074300	No alias	40S ribosomal protein S2 (AHRD V3.3 *** K7WJZ4_SOLTU)	0.29	Orthogroups_2024-Update
Sopen04g026210	No alias	Ribosomal protein S5, N-terminal domain	0.22	Orthogroups_2024-Update
Sopen04g029430	No alias	Ribosomal protein S5, N-terminal domain	0.22	Orthogroups_2024-Update
evm.model.contig_4442.1	No alias	(at1g58684 : 326.0) Ribosomal protein S5 family protein;...	0.34	Orthogroups_2024-Update
evm.model.tig00020961.135	No alias	(at3g57490 : 348.0) Ribosomal protein S5 family protein;...	0.04	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	16Dec
MF	GO:0003735	structural constituent of ribosome	IEA	16Dec
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	16Dec
BP	GO:0006412	translation	IEA	16Dec
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000120	RNA polymerase I transcription factor complex	IEP	Predicted GO
MF	GO:0000166	nucleotide binding	IEP	Predicted GO
MF	GO:0001882	nucleoside binding	IEP	Predicted GO
MF	GO:0001883	purine nucleoside binding	IEP	Predicted GO
MF	GO:0003746	translation elongation factor activity	IEP	Predicted GO
MF	GO:0003924	GTPase activity	IEP	Predicted GO
MF	GO:0004809	tRNA (guanine-N2-)-methyltransferase activity	IEP	Predicted GO
MF	GO:0005525	GTP binding	IEP	Predicted GO
BP	GO:0006360	transcription by RNA polymerase I	IEP	Predicted GO
BP	GO:0006414	translational elongation	IEP	Predicted GO
MF	GO:0008097	5S rRNA binding	IEP	Predicted GO
MF	GO:0008135	translation factor activity, RNA binding	IEP	Predicted GO
MF	GO:0008175	tRNA methyltransferase activity	IEP	Predicted GO
MF	GO:0016423	tRNA (guanine) methyltransferase activity	IEP	Predicted GO
MF	GO:0016462	pyrophosphatase activity	IEP	Predicted GO
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	Predicted GO
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	Predicted GO
MF	GO:0017076	purine nucleotide binding	IEP	Predicted GO
MF	GO:0017111	nucleoside-triphosphatase activity	IEP	Predicted GO
MF	GO:0019001	guanyl nucleotide binding	IEP	Predicted GO
MF	GO:0032549	ribonucleoside binding	IEP	Predicted GO
MF	GO:0032550	purine ribonucleoside binding	IEP	Predicted GO
MF	GO:0032553	ribonucleotide binding	IEP	Predicted GO
MF	GO:0032555	purine ribonucleotide binding	IEP	Predicted GO
MF	GO:0032561	guanyl ribonucleotide binding	IEP	Predicted GO
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Predicted GO
MF	GO:0036094	small molecule binding	IEP	Predicted GO
MF	GO:0043168	anion binding	IEP	Predicted GO
CC	GO:0044452	nucleolar part	IEP	Predicted GO
CC	GO:0044798	nuclear transcription factor complex	IEP	Predicted GO
MF	GO:0097367	carbohydrate derivative binding	IEP	Predicted GO
MF	GO:1901265	nucleoside phosphate binding	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR005324	Ribosomal_S5_C	174	244
IPR013810	Ribosomal_S5_N	90	154

External Links

No external refs found!

Seita.2G079700.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation