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  5. Seita.2G088300.1

Seita.2G088300.1


Description : component *(eS12) of small ribosomal-subunit (SSU) proteome


Gene families : OG_42_0002151 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002151_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.2G088300.1
Cluster HCAA Clusters: Cluster_265

Target Alias Description ECC score Gene Family Method Actions
441919 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.21 Orthogroups_2024-Update
At2g32060 No alias 40S ribosomal protein S12... 0.03 Orthogroups_2024-Update
Bradi1g06520 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.19 Orthogroups_2024-Update
Bradi1g53740 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.24 Orthogroups_2024-Update
Brara.C01639.1 No alias component *(eS12) of small ribosomal-subunit (SSU) proteome 0.05 Orthogroups_2024-Update
Brara.D01947.1 No alias component *(eS12) of small ribosomal-subunit (SSU) proteome 0.14 Orthogroups_2024-Update
Brara.E01168.1 No alias component *(eS12) of small ribosomal-subunit (SSU) proteome 0.03 Orthogroups_2024-Update
Brara.F01106.1 No alias component *(eS12) of small ribosomal-subunit (SSU) proteome 0.15 Orthogroups_2024-Update
Brara.H02521.1 No alias component *(eS12) of small ribosomal-subunit (SSU) proteome 0.18 Orthogroups_2024-Update
Brara.I04904.1 No alias component *(eS12) of small ribosomal-subunit (SSU) proteome 0.22 Orthogroups_2024-Update
Cre04.g214503 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.22 Orthogroups_2024-Update
GRMZM2G063340 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.16 Orthogroups_2024-Update
Glyma.07G023900 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.13 Orthogroups_2024-Update
Glyma.08G217700 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.08 Orthogroups_2024-Update
Glyma.13G369700 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.12 Orthogroups_2024-Update
Glyma.15G003700 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.07 Orthogroups_2024-Update
HORVU2Hr1G053290.6 No alias component *(eS12) of small ribosomal-subunit (SSU) proteome 0.11 Orthogroups_2024-Update
HORVU5Hr1G103330.3 No alias component *(eS12) of small ribosomal-subunit (SSU) proteome 0.12 Orthogroups_2024-Update
Kfl00170_0060 kfl00170_0060_v1.1 (q9xhs0|rs12_horvu : 207.0) 40S ribosomal protein S12 -... 0.06 Orthogroups_2024-Update
MA_16920g0010 No alias (q9xhs0|rs12_horvu : 225.0) 40S ribosomal protein S12 -... 0.05 Orthogroups_2024-Update
Mp7g11470.1 No alias component RPS12 of SSU proteome 0.03 Orthogroups_2024-Update
Potri.001G046600 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.12 Orthogroups_2024-Update
Potri.002G056200 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.06 Orthogroups_2024-Update
Pp1s194_130V6 No alias 40s ribosomal protein s12 0.1 Orthogroups_2024-Update
Sobic.002G081600.1 No alias component *(eS12) of small ribosomal-subunit (SSU) proteome 0.21 Orthogroups_2024-Update
Sobic.009G144300.1 No alias component *(eS12) of small ribosomal-subunit (SSU) proteome 0.14 Orthogroups_2024-Update
Sobic.009G242400.1 No alias component *(eS12) of small ribosomal-subunit (SSU) proteome 0.2 Orthogroups_2024-Update
Solyc01g103800 No alias 40S ribosomal protein S12 (AHRD V3.3 *** K4B1V5_SOLLC) 0.14 Orthogroups_2024-Update
Solyc12g042650 No alias 40S ribosomal protein S12 (AHRD V3.3 *** M1CSI4_SOLTU) 0.25 Orthogroups_2024-Update
Sopen01g046200 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 0.18 Orthogroups_2024-Update
Sopen12g021800 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 0.18 Orthogroups_2024-Update
evm.model.contig_3478.2 No alias (q9xhs0|rs12_horvu : 146.0) 40S ribosomal protein S12 -... 0.31 Orthogroups_2024-Update
evm.model.tig00020903.34 No alias (q9xhs0|rs12_horvu : 149.0) 40S ribosomal protein S12 -... 0.16 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003674 molecular_function IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0003746 translation elongation factor activity IEP Predicted GO
MF GO:0003924 GTPase activity IEP Predicted GO
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006414 translational elongation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
BP GO:0008033 tRNA processing IEP Predicted GO
BP GO:0008150 biological_process IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
MF GO:0008173 RNA methyltransferase activity IEP Predicted GO
MF GO:0008175 tRNA methyltransferase activity IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
MF GO:0010309 acireductone dioxygenase [iron(II)-requiring] activity IEP Predicted GO
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR004038 Ribosomal_L7Ae/L30e/S12e/Gad45 26 119
No external refs found!