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  5. Solyc03g098280

Solyc03g098280


Description : Argonaute 1b


Gene families : OG_42_0000134 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000134_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc03g098280
Cluster HCCA clusters: Cluster_245

Target Alias Description ECC score Gene Family Method Actions
Brara.F03787.1 No alias miRNA recruiting factor (AGO) of RNA-induced silencing... 0.03 Orthogroups_2024-Update
Kfl00085_0250 kfl00085_0250_v1.... (at1g48410 : 963.0) Encodes an RNA Slicer that... 0.01 Orthogroups_2024-Update
LOC_Os02g45070 No alias PINHEAD, putative, expressed 0.03 Orthogroups_2024-Update
PSME_00001016-RA No alias (at5g43810 : 1422.0) Encodes a member of the EIF2C... 0.03 Orthogroups_2024-Update
Potri.015G029000 No alias Stabilizer of iron transporter SufD / Polynucleotidyl transferase 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005088 Ras guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005089 Rho guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0008092 cytoskeletal protein binding IEP Predicted GO
BP GO:0016226 iron-sulfur cluster assembly IEP Predicted GO
MF GO:0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor IEP Predicted GO
MF GO:0016972 thiol oxidase activity IEP Predicted GO
MF GO:0017048 Rho GTPase binding IEP Predicted GO
BP GO:0019725 cellular homeostasis IEP Predicted GO
BP GO:0031163 metallo-sulfur cluster assembly IEP Predicted GO
BP GO:0045454 cell redox homeostasis IEP Predicted GO
InterPro domains Description Start Stop
IPR024357 Argonaut_Gly-rich 95 207
IPR014811 ArgoL1 371 420
IPR032473 Argonaute_Mid_dom 620 694
IPR003100 PAZ_dom 427 552
IPR003165 Piwi 714 1033
IPR032474 Argonaute_N 227 361
IPR032472 ArgoL2 563 609
No external refs found!