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  5. Seita.2G110900.1

Seita.2G110900.1


Description : UBQ ubiquitin-fold protein


Gene families : OG_42_0000048 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000048_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood Setaria italica: Seita.2G110900.1
Cluster HCAA Clusters: Cluster_71

Target Alias Description ECC score Gene Family Method Actions
173723 No alias polyubiquitin 10 0.02 Orthogroups_2024-Update
A4A49_63164 No alias polyubiquitin 10 0.03 Orthogroups_2024-Update
Bradi1g32460 No alias polyubiquitin 10 0.03 Orthogroups_2024-Update
Bradi4g28550 No alias related to ubiquitin 1 0.03 Orthogroups_2024-Update
Cre12.g491400 No alias related to ubiquitin 1 0.02 Orthogroups_2024-Update
MA_13121g0010 No alias (at5g03240 : 264.0) encodes ubiquitin that is attached... 0.02 Orthogroups_2024-Update
Potri.011G026600 No alias polyubiquitin 3 0.03 Orthogroups_2024-Update
Pp1s129_28V6 No alias Putative polyubiquitin 0.02 Orthogroups_2024-Update
Pp1s351_6V6 No alias polyubiquitin containing 7 ubiquitin monomers 0.02 Orthogroups_2024-Update
Sobic.003G403700.1 No alias UBQ ubiquitin-fold protein 0.03 Orthogroups_2024-Update
Sobic.004G050100.1 No alias UBQ ubiquitin-fold protein 0.03 Orthogroups_2024-Update
Sobic.010G239500.6 No alias UBQ ubiquitin-fold protein 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003729 mRNA binding IEP Predicted GO
MF GO:0004427 inorganic diphosphatase activity IEP Predicted GO
CC GO:0005849 mRNA cleavage factor complex IEP Predicted GO
BP GO:0006378 mRNA polyadenylation IEP Predicted GO
BP GO:0006397 mRNA processing IEP Predicted GO
MF GO:0008194 UDP-glycosyltransferase activity IEP Predicted GO
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Predicted GO
BP GO:0031123 RNA 3'-end processing IEP Predicted GO
BP GO:0031124 mRNA 3'-end processing IEP Predicted GO
BP GO:0043631 RNA polyadenylation IEP Predicted GO
CC GO:0044451 nucleoplasm part IEP Predicted GO
InterPro domains Description Start Stop
IPR000626 Ubiquitin_dom 79 150
IPR000626 Ubiquitin_dom 155 226
IPR000626 Ubiquitin_dom 3 74
IPR000626 Ubiquitin_dom 231 302
IPR000626 Ubiquitin_dom 307 378
No external refs found!