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  5. Seita.2G116200.1

Seita.2G116200.1


Description : Unknown function


Gene families : OG_42_0000025 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000025_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.2G116200.1
Cluster HCAA Clusters: Cluster_24

Target Alias Description ECC score Gene Family Method Actions
Bradi4g12910 No alias BTB-POZ and MATH domain 2 0.03 Orthogroups_2024-Update
Bradi4g23767 No alias BTB-POZ and MATH domain 2 0.03 Orthogroups_2024-Update
LOC_Os06g14060 No alias MBTB10 - Bric-a-Brac, Tramtrack, Broad Complex BTB... 0.02 Orthogroups_2024-Update
LOC_Os08g03490 No alias ATBPM1, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os08g03500 No alias MBTB17 - Bric-a-Brac, Tramtrack, Broad Complex BTB... 0.02 Orthogroups_2024-Update
LOC_Os08g41240 No alias MrBTB4 - Bric-a-Brac, Tramtrack, Broad Complex BTB... 0.04 Orthogroups_2024-Update
LOC_Os10g29410 No alias MBTB53 - Bric-a-Brac, Tramtrack, Broad Complex BTB... 0.03 Orthogroups_2024-Update
LOC_Os10g29750 No alias MBTB56 - Bric-a-Brac, Tramtrack, Broad Complex BTB... 0.03 Orthogroups_2024-Update
LOC_Os10g29790 No alias MBTB57 - Bric-a-Brac, Tramtrack, Broad Complex BTB... 0.04 Orthogroups_2024-Update
PSME_00046061-RA No alias (at3g03740 : 158.0) BTB-POZ and MATH domain 4 (BPM4);... 0.04 Orthogroups_2024-Update
Seita.9G264500.1 No alias Unknown function 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003905 alkylbase DNA N-glycosylase activity IEP Predicted GO
MF GO:0003968 RNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
BP GO:0006284 base-excision repair IEP Predicted GO
MF GO:0008725 DNA-3-methyladenine glycosylase activity IEP Predicted GO
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Predicted GO
MF GO:0019104 DNA N-glycosylase activity IEP Predicted GO
MF GO:0034062 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0043733 DNA-3-methylbase glycosylase activity IEP Predicted GO
MF GO:0097747 RNA polymerase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR000210 BTB/POZ_dom 75 114
No external refs found!