Description : mitochondrial RNA pseudouridine synthase *(PUS3/4)
Gene families : OG_42_0003434 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003434_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Setaria italica: Seita.2G140100.1 | |
Cluster | HCAA Clusters: Cluster_144 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Bradi3g40480 | No alias | Pseudouridine synthase family protein | 0.04 | Orthogroups_2024-Update | |
LOC_Os09g01620 | No alias | RNA pseudouridine synthase, putative, expressed | 0.04 | Orthogroups_2024-Update | |
Sobic.002G140800.1 | No alias | mitochondrial RNA pseudouridine synthase *(PUS3/4) | 0.03 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0001522 | pseudouridine synthesis | IEA | 16Dec |
MF | GO:0003723 | RNA binding | IEA | 16Dec |
BP | GO:0009451 | RNA modification | IEA | 16Dec |
MF | GO:0009982 | pseudouridine synthase activity | IEA | 16Dec |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003755 | peptidyl-prolyl cis-trans isomerase activity | IEP | Predicted GO |
MF | GO:0004640 | phosphoribosylanthranilate isomerase activity | IEP | Predicted GO |
CC | GO:0005759 | mitochondrial matrix | IEP | Predicted GO |
BP | GO:0006568 | tryptophan metabolic process | IEP | Predicted GO |
BP | GO:0006576 | cellular biogenic amine metabolic process | IEP | Predicted GO |
BP | GO:0006586 | indolalkylamine metabolic process | IEP | Predicted GO |
BP | GO:0009072 | aromatic amino acid family metabolic process | IEP | Predicted GO |
BP | GO:0009308 | amine metabolic process | IEP | Predicted GO |
MF | GO:0016859 | cis-trans isomerase activity | IEP | Predicted GO |
MF | GO:0016860 | intramolecular oxidoreductase activity | IEP | Predicted GO |
MF | GO:0016861 | intramolecular oxidoreductase activity, interconverting aldoses and ketoses | IEP | Predicted GO |
CC | GO:0031974 | membrane-enclosed lumen | IEP | Predicted GO |
BP | GO:0042430 | indole-containing compound metabolic process | IEP | Predicted GO |
CC | GO:0043233 | organelle lumen | IEP | Predicted GO |
BP | GO:0044106 | cellular amine metabolic process | IEP | Predicted GO |
CC | GO:0044429 | mitochondrial part | IEP | Predicted GO |
CC | GO:0070013 | intracellular organelle lumen | IEP | Predicted GO |
BP | GO:1901605 | alpha-amino acid metabolic process | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR006145 | PsdUridine_synth_RsuA/RluD | 185 | 351 |
No external refs found! |