Seita.2G140100.1


Description : mitochondrial RNA pseudouridine synthase *(PUS3/4)


Gene families : OG_42_0003434 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003434_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.2G140100.1
Cluster HCAA Clusters: Cluster_144

Target Alias Description ECC score Gene Family Method Actions
Bradi3g40480 No alias Pseudouridine synthase family protein 0.04 Orthogroups_2024-Update
LOC_Os09g01620 No alias RNA pseudouridine synthase, putative, expressed 0.04 Orthogroups_2024-Update
Sobic.002G140800.1 No alias mitochondrial RNA pseudouridine synthase *(PUS3/4) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEA 16Dec
MF GO:0003723 RNA binding IEA 16Dec
BP GO:0009451 RNA modification IEA 16Dec
MF GO:0009982 pseudouridine synthase activity IEA 16Dec
Type GO Term Name Evidence Source
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Predicted GO
MF GO:0004640 phosphoribosylanthranilate isomerase activity IEP Predicted GO
CC GO:0005759 mitochondrial matrix IEP Predicted GO
BP GO:0006568 tryptophan metabolic process IEP Predicted GO
BP GO:0006576 cellular biogenic amine metabolic process IEP Predicted GO
BP GO:0006586 indolalkylamine metabolic process IEP Predicted GO
BP GO:0009072 aromatic amino acid family metabolic process IEP Predicted GO
BP GO:0009308 amine metabolic process IEP Predicted GO
MF GO:0016859 cis-trans isomerase activity IEP Predicted GO
MF GO:0016860 intramolecular oxidoreductase activity IEP Predicted GO
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP Predicted GO
CC GO:0031974 membrane-enclosed lumen IEP Predicted GO
BP GO:0042430 indole-containing compound metabolic process IEP Predicted GO
CC GO:0043233 organelle lumen IEP Predicted GO
BP GO:0044106 cellular amine metabolic process IEP Predicted GO
CC GO:0044429 mitochondrial part IEP Predicted GO
CC GO:0070013 intracellular organelle lumen IEP Predicted GO
BP GO:1901605 alpha-amino acid metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR006145 PsdUridine_synth_RsuA/RluD 185 351
No external refs found!