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  5. Seita.2G168900.1

Seita.2G168900.1


Description : GARP subgroup PHL transcription factor


Gene families : OG_42_0000021 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000021_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.2G168900.1
Cluster HCAA Clusters: Cluster_246

Target Alias Description ECC score Gene Family Method Actions
A4A49_11176 No alias putative myb family transcription factor 0.02 Orthogroups_2024-Update
A4A49_12162 No alias protein phosphate starvation response 1 0.02 Orthogroups_2024-Update
Bradi1g31837 No alias Homeodomain-like superfamily protein 0.03 Orthogroups_2024-Update
Bradi1g32370 No alias Homeodomain-like superfamily protein 0.05 Orthogroups_2024-Update
Brara.F03510.1 No alias GARP subgroup PHL transcription factor 0.03 Orthogroups_2024-Update
GRMZM2G035370 No alias myb-like HTH transcriptional regulator family protein 0.04 Orthogroups_2024-Update
Glyma.01G014800 No alias Homeodomain-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.03G003500 No alias myb-like HTH transcriptional regulator family protein 0.06 Orthogroups_2024-Update
Glyma.12G089100 No alias Homeodomain-like superfamily protein 0.05 Orthogroups_2024-Update
Glyma.13G228900 No alias myb-like HTH transcriptional regulator family protein 0.04 Orthogroups_2024-Update
HORVU5Hr1G097900.21 No alias Unknown function 0.03 Orthogroups_2024-Update
LOC_Os08g33750 No alias myb-like DNA-binding domain containing protein, expressed 0.03 Orthogroups_2024-Update
MA_335624g0020 No alias (at4g28610 : 125.0) Similar to phosphate starvation... 0.03 Orthogroups_2024-Update
Seita.8G019800.1 No alias transcription factor *(CLAUSA) 0.03 Orthogroups_2024-Update
Solyc09g005370 No alias MYB transcription factor (AHRD V3.3 *-* K9JGB9_SOYBN) 0.03 Orthogroups_2024-Update
Solyc10g083340 No alias Myb family transcription factor APL (AHRD V3.3 ***... 0.06 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000428 DNA-directed RNA polymerase complex IEP Predicted GO
MF GO:0004252 serine-type endopeptidase activity IEP Predicted GO
CC GO:0005666 RNA polymerase III complex IEP Predicted GO
BP GO:0006383 transcription by RNA polymerase III IEP Predicted GO
CC GO:0030880 RNA polymerase complex IEP Predicted GO
CC GO:0055029 nuclear DNA-directed RNA polymerase complex IEP Predicted GO
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Predicted GO
CC GO:1990234 transferase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR001005 SANT/Myb 49 99
IPR025756 Myb_CC_LHEQLE 133 178
No external refs found!