Solyc01g017850

Description : LOW QUALITY:PIF1-like helicase (AHRD V3.3 *-* A0A072TJC6_MEDTR)

Gene families : OG_42_0000057 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000057_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Solyc01g017850
Cluster	HCCA clusters: Cluster_24

Target	Alias	Description	ECC score	Gene Family Method
A4A49_57387	No alias	hypothetical protein	0.03	Orthogroups_2024-Update
Brara.K00684.1	No alias	Unknown function	0.03	Orthogroups_2024-Update
GRMZM2G173929	No alias	PIF1 helicase	0.03	Orthogroups_2024-Update
Glyma.07G171700	No alias	PIF1 helicase	0.04	Orthogroups_2024-Update
Glyma.15G190000	No alias	Function unknown	0.05	Orthogroups_2024-Update
Glyma.15G193800	No alias	PIF1 helicase	0.03	Orthogroups_2024-Update
Glyma.19G051300	No alias	PIF1 helicase	0.03	Orthogroups_2024-Update
LOC_Os05g28260	No alias	expressed protein	0.02	Orthogroups_2024-Update
LOC_Os07g45750	No alias	retrotransposon protein, putative, unclassified, expressed	0.02	Orthogroups_2024-Update
LOC_Os10g23110	No alias	retrotransposon protein, putative, unclassified, expressed	0.02	Orthogroups_2024-Update
LOC_Os11g44014	No alias	retrotransposon protein, putative, unclassified, expressed	0.04	Orthogroups_2024-Update
LOC_Os11g47410	No alias	retrotransposon protein, putative, unclassified, expressed	0.02	Orthogroups_2024-Update
Seita.1G148500.1	No alias	Unknown function	0.02	Orthogroups_2024-Update
Solyc12g017560	No alias	LOW QUALITY:AT hook motif-containing protein, putative...	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
BP	GO:0000723	telomere maintenance	IEA	InterProScan predictions
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003678	DNA helicase activity	IEA	InterProScan predictions
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	IEA	InterProScan predictions
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0017111	nucleoside-triphosphatase activity	None	Extended
BP	GO:0032200	telomere organization	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0042592	homeostatic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051276	chromosome organization	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0060249	anatomical structure homeostasis	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065008	regulation of biological quality	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000096	sulfur amino acid metabolic process	IEP	Predicted GO
MF	GO:0003849	3-deoxy-7-phosphoheptulonate synthase activity	IEP	Predicted GO
MF	GO:0004489	methylenetetrahydrofolate reductase (NAD(P)H) activity	IEP	Predicted GO
BP	GO:0006520	cellular amino acid metabolic process	IEP	Predicted GO
BP	GO:0006555	methionine metabolic process	IEP	Predicted GO
BP	GO:0006813	potassium ion transport	IEP	Predicted GO
MF	GO:0009055	electron transfer activity	IEP	Predicted GO
BP	GO:0009066	aspartate family amino acid metabolic process	IEP	Predicted GO
BP	GO:0009072	aromatic amino acid family metabolic process	IEP	Predicted GO
BP	GO:0009073	aromatic amino acid family biosynthetic process	IEP	Predicted GO
MF	GO:0015079	potassium ion transmembrane transporter activity	IEP	Predicted GO
MF	GO:0016491	oxidoreductase activity	IEP	Predicted GO
MF	GO:0016645	oxidoreductase activity, acting on the CH-NH group of donors	IEP	Predicted GO
MF	GO:0016646	oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor	IEP	Predicted GO
MF	GO:0019843	rRNA binding	IEP	Predicted GO
BP	GO:0071805	potassium ion transmembrane transport	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR010285	DNA_helicase_pif1-like	356	597
IPR025476	Helitron_helicase-like	1	153

External Links

No external refs found!

Solyc01g017850

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation