1. Home
  2. Species
  3. Setaria italica
  4. Sequence
  5. Seita.2G230300.1

Seita.2G230300.1


Description : Unknown function


Gene families : OG_42_0015977 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0015977_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.2G230300.1
Cluster HCAA Clusters: Cluster_134

Target Alias Description ECC score Gene Family Method Actions
MA_30833g0010 No alias (p27932|amy3a_orysa : 253.0) Alpha-amylase isozyme 3A... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004556 alpha-amylase activity IEA 16Dec
MF GO:0005509 calcium ion binding IEA 16Dec
BP GO:0005975 carbohydrate metabolic process IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP Predicted GO
BP GO:0001510 RNA methylation IEP Predicted GO
MF GO:0005319 lipid transporter activity IEP Predicted GO
MF GO:0005542 folic acid binding IEP Predicted GO
BP GO:0006869 lipid transport IEP Predicted GO
MF GO:0008170 N-methyltransferase activity IEP Predicted GO
MF GO:0008173 RNA methyltransferase activity IEP Predicted GO
MF GO:0008194 UDP-glycosyltransferase activity IEP Predicted GO
MF GO:0008649 rRNA methyltransferase activity IEP Predicted GO
MF GO:0016436 rRNA (uridine) methyltransferase activity IEP Predicted GO
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Predicted GO
BP GO:0031167 rRNA methylation IEP Predicted GO
MF GO:0031406 carboxylic acid binding IEP Predicted GO
MF GO:0033218 amide binding IEP Predicted GO
MF GO:0043177 organic acid binding IEP Predicted GO
BP GO:0043414 macromolecule methylation IEP Predicted GO
BP GO:0061024 membrane organization IEP Predicted GO
MF GO:0070042 rRNA (uridine-N3-)-methyltransferase activity IEP Predicted GO
BP GO:0070475 rRNA base methylation IEP Predicted GO
MF GO:0072341 modified amino acid binding IEP Predicted GO
BP GO:0120009 intermembrane lipid transfer IEP Predicted GO
MF GO:0120013 intermembrane lipid transfer activity IEP Predicted GO
MF GO:0140102 catalytic activity, acting on a rRNA IEP Predicted GO
InterPro domains Description Start Stop
IPR012850 A-amylase_bs_C 116 159
No external refs found!