1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc03g098420

Solyc03g098420


Description : Pentatricopeptide repeat-containing protein (AHRD V3.3 *** A0A103Y1J2_CYNCS)


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc03g098420
Cluster HCCA clusters: Cluster_114

Target Alias Description ECC score Gene Family Method Actions
130453 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
131170 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
180422 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
A4A49_07003 No alias pentatricopeptide repeat-containing protein 0.03 Orthogroups_2024-Update
A4A49_13653 No alias pentatricopeptide repeat-containing protein 0.03 Orthogroups_2024-Update
At3g13880 No alias Pentatricopeptide repeat-containing protein At3g13880... 0.03 Orthogroups_2024-Update
At3g61170 No alias Tetratricopeptide repeat (TPR)-like superfamily protein... 0.03 Orthogroups_2024-Update
Brara.G00509.1 No alias Unknown function 0.04 Orthogroups_2024-Update
GRMZM2G481373 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.19G202500 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
HORVU2Hr1G035330.2 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU6Hr1G057130.1 No alias Unknown function 0.03 Orthogroups_2024-Update
LOC_Os01g59890 No alias pentatricopeptide, putative, expressed 0.02 Orthogroups_2024-Update
PSME_00056623-RA No alias (at2g03880 : 555.0) Pentatricopeptide repeat (PPR)... 0.02 Orthogroups_2024-Update
Potri.006G076100 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Pp1s48_253V6 No alias hypothetical protein [Oryza sativa (japonica cultivar-group)] 0.02 Orthogroups_2024-Update
Seita.8G075300.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sopen00g008750 No alias PPR repeat 0.03 Orthogroups_2024-Update
Sopen01g032860 No alias PPR repeat family 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP Predicted GO
CC GO:0000152 nuclear ubiquitin ligase complex IEP Predicted GO
CC GO:0005680 anaphase-promoting complex IEP Predicted GO
CC GO:0005875 microtubule associated complex IEP Predicted GO
BP GO:0006400 tRNA modification IEP Predicted GO
MF GO:0008192 RNA guanylyltransferase activity IEP Predicted GO
MF GO:0008193 tRNA guanylyltransferase activity IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
CC GO:0016459 myosin complex IEP Predicted GO
MF GO:0016779 nucleotidyltransferase activity IEP Predicted GO
CC GO:0030286 dynein complex IEP Predicted GO
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044430 cytoskeletal part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
MF GO:0070568 guanylyltransferase activity IEP Predicted GO
CC GO:1902494 catalytic complex IEP Predicted GO
CC GO:1990234 transferase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR032867 DYW_dom 688 809
IPR002885 Pentatricopeptide_repeat 207 251
IPR002885 Pentatricopeptide_repeat 107 152
IPR002885 Pentatricopeptide_repeat 410 455
IPR002885 Pentatricopeptide_repeat 511 558
IPR002885 Pentatricopeptide_repeat 653 681
IPR002885 Pentatricopeptide_repeat 79 106
IPR002885 Pentatricopeptide_repeat 311 337
IPR002885 Pentatricopeptide_repeat 283 307
IPR002885 Pentatricopeptide_repeat 586 609
No external refs found!