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  5. Seita.2G237900.1

Seita.2G237900.1


Description : RING-H2-class ATL-subclass E3 ubiquitin ligase


Gene families : OG_42_0000003 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.2G237900.1
Cluster HCAA Clusters: Cluster_148

Target Alias Description ECC score Gene Family Method Actions
A4A49_18116 No alias ring-h2 finger protein atl78 0.02 Orthogroups_2024-Update
Bradi3g45890 No alias RING/U-box superfamily protein 0.06 Orthogroups_2024-Update
Brara.H00836.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Cre11.g476250 No alias Zinc finger, C3HC4 type (RING finger) family protein 0.01 Orthogroups_2024-Update
Cre16.g651400 No alias RING/U-box superfamily protein 0.01 Orthogroups_2024-Update
GRMZM2G145382 No alias RING/U-box superfamily protein 0.05 Orthogroups_2024-Update
HORVU1Hr1G069670.1 No alias Unknown function 0.04 Orthogroups_2024-Update
HORVU2Hr1G094840.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.04 Orthogroups_2024-Update
HORVU3Hr1G069960.1 No alias Unknown function 0.04 Orthogroups_2024-Update
HORVU4Hr1G025400.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
HORVU5Hr1G082840.1 No alias Unknown function 0.02 Orthogroups_2024-Update
LOC_Os08g37760 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.02 Orthogroups_2024-Update
Potri.005G160900 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Seita.3G171500.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.06 Orthogroups_2024-Update
Seita.3G227200.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.002G233000.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.05 Orthogroups_2024-Update
Sobic.003G344400.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Sobic.004G063750.1 No alias Unknown function 0.06 Orthogroups_2024-Update
Sobic.004G251100.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.010G157500.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.05 Orthogroups_2024-Update
Solyc07g053420 No alias RING/U-box superfamily protein (AHRD V3.3 *** AT2G42360.1) 0.03 Orthogroups_2024-Update
evm.model.tig00000204.87 No alias (at1g72200 : 83.6) RING/U-box superfamily protein;... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0008418 protein-N-terminal asparagine amidohydrolase activity IEP Predicted GO
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Predicted GO
MF GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEP Predicted GO
MF GO:0043531 ADP binding IEP Predicted GO
InterPro domains Description Start Stop
IPR001841 Znf_RING 159 202
No external refs found!