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  5. Seita.2G250200.1

Seita.2G250200.1


Description : Fasciclin-type arabinogalactan protein


Gene families : OG_42_0006770 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0006770_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.2G250200.1
Cluster HCAA Clusters: Cluster_61

Target Alias Description ECC score Gene Family Method Actions
A4A49_14838 No alias fasciclin-like arabinogalactan protein 7 0.03 Orthogroups_2024-Update
HORVU5Hr1G072620.4 No alias Fasciclin-type arabinogalactan protein 0.03 Orthogroups_2024-Update
HORVU7Hr1G049860.1 No alias Fasciclin-type arabinogalactan protein 0.03 Orthogroups_2024-Update
LOC_Os08g39270 No alias fasciclin domain containing protein, expressed 0.02 Orthogroups_2024-Update
Potri.002G223300 No alias FASCICLIN-like arabinoogalactan 7 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004527 exonuclease activity IEP Predicted GO
MF GO:0004568 chitinase activity IEP Predicted GO
BP GO:0006022 aminoglycan metabolic process IEP Predicted GO
BP GO:0006026 aminoglycan catabolic process IEP Predicted GO
BP GO:0006030 chitin metabolic process IEP Predicted GO
BP GO:0006032 chitin catabolic process IEP Predicted GO
BP GO:0006040 amino sugar metabolic process IEP Predicted GO
MF GO:0008408 3'-5' exonuclease activity IEP Predicted GO
BP GO:0016998 cell wall macromolecule catabolic process IEP Predicted GO
BP GO:0042737 drug catabolic process IEP Predicted GO
BP GO:0044036 cell wall macromolecule metabolic process IEP Predicted GO
BP GO:0046348 amino sugar catabolic process IEP Predicted GO
BP GO:1901071 glucosamine-containing compound metabolic process IEP Predicted GO
BP GO:1901072 glucosamine-containing compound catabolic process IEP Predicted GO
BP GO:1901136 carbohydrate derivative catabolic process IEP Predicted GO
BP GO:1901565 organonitrogen compound catabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR000782 FAS1_domain 62 193
No external refs found!