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  5. Seita.2G253000.1

Seita.2G253000.1


Description : component *(eIF3c) of eIF3 mRNA-to-PIC binding complex


Gene families : OG_42_0002950 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002950_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.2G253000.1
Cluster HCAA Clusters: Cluster_45

Target Alias Description ECC score Gene Family Method Actions
437467 No alias eukaryotic translation initiation factor 3C 0.03 Orthogroups_2024-Update
At3g56150 No alias Eukaryotic translation initiation factor 3 subunit C... 0.06 Orthogroups_2024-Update
Bradi4g30730 No alias eukaryotic translation initiation factor 3C 0.05 Orthogroups_2024-Update
Bradi4g30780 No alias eukaryotic translation initiation factor 3C 0.04 Orthogroups_2024-Update
Bradi5g12910 No alias eukaryotic translation initiation factor 3C 0.05 Orthogroups_2024-Update
Cre04.g217550 No alias eukaryotic translation initiation factor 3C 0.11 Orthogroups_2024-Update
Glyma.03G206400 No alias eukaryotic translation initiation factor 3C 0.04 Orthogroups_2024-Update
HORVU5Hr1G063770.2 No alias component *(eIF3c) of eIF3 mRNA-to-PIC binding complex 0.06 Orthogroups_2024-Update
HORVU5Hr1G098600.2 No alias component *(eIF3c) of eIF3 mRNA-to-PIC binding complex 0.05 Orthogroups_2024-Update
Kfl00981_0040 kfl00981_0040_v1.1 (at3g56150 : 833.0) member of eIF3c - eukaryotic... 0.07 Orthogroups_2024-Update
Mp6g05320.1 No alias component eIF3c of eIF3 mRNA-to-PIC binding complex 0.04 Orthogroups_2024-Update
Sobic.002G246700.1 No alias component *(eIF3c) of eIF3 mRNA-to-PIC binding complex 0.05 Orthogroups_2024-Update
Sopen01g044990 No alias Eukaryotic translation initiation factor 3 subunit 8 N-terminus 0.03 Orthogroups_2024-Update
Sopen06g032550 No alias Eukaryotic translation initiation factor 3 subunit 8 N-terminus 0.03 Orthogroups_2024-Update
evm.model.contig_4420.1 No alias (q9xhm1|if38_medtr : 393.0) Eukaryotic translation... 0.03 Orthogroups_2024-Update
evm.model.tig00000842.12 No alias (at3g56150 : 460.0) member of eIF3c - eukaryotic... 0.09 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEA 16Dec
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEA 16Dec
BP GO:0006413 translational initiation IEA 16Dec
MF GO:0031369 translation initiation factor binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003724 RNA helicase activity IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0003924 GTPase activity IEP Predicted GO
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP Predicted GO
MF GO:0005049 nuclear export signal receptor activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005737 cytoplasm IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006334 nucleosome assembly IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0008104 protein localization IEP Predicted GO
MF GO:0008175 tRNA methyltransferase activity IEP Predicted GO
MF GO:0008237 metallopeptidase activity IEP Predicted GO
MF GO:0008565 protein transporter activity IEP Predicted GO
MF GO:0009982 pseudouridine synthase activity IEP Predicted GO
BP GO:0015031 protein transport IEP Predicted GO
BP GO:0015833 peptide transport IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Predicted GO
MF GO:0016462 pyrophosphatase activity IEP Predicted GO
MF GO:0016787 hydrolase activity IEP Predicted GO
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Predicted GO
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
MF GO:0017111 nucleoside-triphosphatase activity IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
MF GO:0031267 small GTPase binding IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
MF GO:0032977 membrane insertase activity IEP Predicted GO
BP GO:0033036 macromolecule localization IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
BP GO:0034728 nucleosome organization IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0042886 amide transport IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
BP GO:0045184 establishment of protein localization IEP Predicted GO
BP GO:0046907 intracellular transport IEP Predicted GO
BP GO:0051641 cellular localization IEP Predicted GO
BP GO:0051649 establishment of localization in cell IEP Predicted GO
BP GO:0065004 protein-DNA complex assembly IEP Predicted GO
BP GO:0071824 protein-DNA complex subunit organization IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
MF GO:0140104 molecular carrier activity IEP Predicted GO
MF GO:0140142 nucleocytoplasmic carrier activity IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR000717 PCI_dom 667 795
IPR008905 EIF3C_N_dom 50 659
No external refs found!