Seita.2G326100.1

Description : RNA helicase *(Prp16)

Gene families : OG_42_0000210 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000210_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria italica: Seita.2G326100.1
Cluster	HCAA Clusters: Cluster_179

Target	Alias	Description	ECC score	Gene Family Method
A4A49_60643	No alias	pre-mrna-splicing factor atp-dependent rna helicase deah1	0.03	Orthogroups_2024-Update
At1g32490	No alias	ESP3 [Source:UniProtKB/TrEMBL;Acc:A0A178W3A5]	0.05	Orthogroups_2024-Update
At4g18465	No alias	Probable pre-mRNA-splicing factor ATP-dependent RNA...	0.03	Orthogroups_2024-Update
At5g13010	No alias	Pre-mRNA-splicing factor ATP-dependent RNA helicase...	0.03	Orthogroups_2024-Update
Bradi1g61220	No alias	RNA helicase family protein	0.06	Orthogroups_2024-Update
Bradi1g64190	No alias	RNA helicase family protein	0.04	Orthogroups_2024-Update
Bradi3g13460	No alias	ATP-dependent RNA helicase, putative	0.03	Orthogroups_2024-Update
Cre07.g349100	No alias	RNA helicase family protein	0.02	Orthogroups_2024-Update
Cre24.g755347	No alias	RNA helicase family protein	0.02	Orthogroups_2024-Update
Glyma.01G142700	No alias	RNA helicase family protein	0.03	Orthogroups_2024-Update
Glyma.02G119000	No alias	RNA helicase family protein	0.03	Orthogroups_2024-Update
Glyma.06G201700	No alias	RNA helicase family protein	0.03	Orthogroups_2024-Update
Glyma.13G342400	No alias	RNA helicase family protein	0.03	Orthogroups_2024-Update
Glyma.15G031900	No alias	RNA helicase family protein	0.03	Orthogroups_2024-Update
Glyma.17G256200	No alias	ATP-dependent RNA helicase, putative	0.05	Orthogroups_2024-Update
HORVU0Hr1G007860.1	No alias	Unknown function	0.02	Orthogroups_2024-Update
HORVU7Hr1G097070.1	No alias	RNA helicase *(Prp16)	0.02	Orthogroups_2024-Update
Kfl00020_0480	kfl00020_0480_v1.1	(at3g26560 : 1414.0) ATP-dependent RNA helicase,...	0.01	Orthogroups_2024-Update
Kfl00502_0080	kfl00502_0080_v1.1	(at4g18465 : 521.0) RNA helicase family protein;...	0.02	Orthogroups_2024-Update
MA_629782g0010	No alias	(at5g13010 : 617.0) embryo defective 3011 (EMB3011);...	0.05	Orthogroups_2024-Update
PSME_00005080-RA	No alias	(at5g13010 : 1519.0) embryo defective 3011 (EMB3011);...	0.02	Orthogroups_2024-Update
PSME_00016394-RA	No alias	(at3g26560 : 1512.0) ATP-dependent RNA helicase,...	0.02	Orthogroups_2024-Update
Potri.010G057200	No alias	RNA helicase family protein	0.05	Orthogroups_2024-Update
Potri.010G172500	No alias	RNA helicase family protein	0.03	Orthogroups_2024-Update
Sobic.001G473000.1	No alias	Unknown function	0.03	Orthogroups_2024-Update
Sobic.002G313400.1	No alias	RNA helicase *(Prp16)	0.02	Orthogroups_2024-Update
Sobic.004G174200.1	No alias	RNA helicase *(Prp2)	0.06	Orthogroups_2024-Update
Solyc01g095710	No alias	RNA helicase DEAH-box3	0.02	Orthogroups_2024-Update
evm.model.tig00021589.29	No alias	(at3g26560 : 868.0) ATP-dependent RNA helicase,...	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	16Dec
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	IEA	16Dec
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	16Dec
MF	GO:0008144	drug binding	None	Extended
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	nucleoside-triphosphatase activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000145	exocyst	IEP	Predicted GO
MF	GO:0005515	protein binding	IEP	Predicted GO
MF	GO:0005516	calmodulin binding	IEP	Predicted GO
CC	GO:0005669	transcription factor TFIID complex	IEP	Predicted GO
CC	GO:0005694	chromosome	IEP	Predicted GO
BP	GO:0006325	chromatin organization	IEP	Predicted GO
BP	GO:0006354	DNA-templated transcription, elongation	IEP	Predicted GO
BP	GO:0006368	transcription elongation from RNA polymerase II promoter	IEP	Predicted GO
BP	GO:0006887	exocytosis	IEP	Predicted GO
CC	GO:0008023	transcription elongation factor complex	IEP	Predicted GO
BP	GO:0009966	regulation of signal transduction	IEP	Predicted GO
BP	GO:0010646	regulation of cell communication	IEP	Predicted GO
BP	GO:0016043	cellular component organization	IEP	Predicted GO
BP	GO:0016192	vesicle-mediated transport	IEP	Predicted GO
BP	GO:0016569	covalent chromatin modification	IEP	Predicted GO
BP	GO:0016570	histone modification	IEP	Predicted GO
CC	GO:0016593	Cdc73/Paf1 complex	IEP	Predicted GO
BP	GO:0018130	heterocycle biosynthetic process	IEP	Predicted GO
BP	GO:0019438	aromatic compound biosynthetic process	IEP	Predicted GO
BP	GO:0022607	cellular component assembly	IEP	Predicted GO
BP	GO:0023051	regulation of signaling	IEP	Predicted GO
BP	GO:0032012	regulation of ARF protein signal transduction	IEP	Predicted GO
BP	GO:0032774	RNA biosynthetic process	IEP	Predicted GO
BP	GO:0032940	secretion by cell	IEP	Predicted GO
BP	GO:0034622	cellular protein-containing complex assembly	IEP	Predicted GO
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	Predicted GO
BP	GO:0043248	proteasome assembly	IEP	Predicted GO
BP	GO:0043933	protein-containing complex subunit organization	IEP	Predicted GO
CC	GO:0044422	organelle part	IEP	Predicted GO
CC	GO:0044424	intracellular part	IEP	Predicted GO
CC	GO:0044428	nuclear part	IEP	Predicted GO
CC	GO:0044446	intracellular organelle part	IEP	Predicted GO
CC	GO:0044448	cell cortex part	IEP	Predicted GO
CC	GO:0044451	nucleoplasm part	IEP	Predicted GO
CC	GO:0044464	cell part	IEP	Predicted GO
CC	GO:0044798	nuclear transcription factor complex	IEP	Predicted GO
BP	GO:0046578	regulation of Ras protein signal transduction	IEP	Predicted GO
BP	GO:0046903	secretion	IEP	Predicted GO
BP	GO:0048583	regulation of response to stimulus	IEP	Predicted GO
BP	GO:0051056	regulation of small GTPase mediated signal transduction	IEP	Predicted GO
MF	GO:0060090	molecular adaptor activity	IEP	Predicted GO
BP	GO:0065003	protein-containing complex assembly	IEP	Predicted GO
BP	GO:0070070	proton-transporting V-type ATPase complex assembly	IEP	Predicted GO
BP	GO:0070071	proton-transporting two-sector ATPase complex assembly	IEP	Predicted GO
BP	GO:0070072	vacuolar proton-transporting V-type ATPase complex assembly	IEP	Predicted GO
BP	GO:0071840	cellular component organization or biogenesis	IEP	Predicted GO
CC	GO:0090575	RNA polymerase II transcription factor complex	IEP	Predicted GO
CC	GO:0099023	tethering complex	IEP	Predicted GO
BP	GO:1902531	regulation of intracellular signal transduction	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR011545	DEAD/DEAH_box_helicase_dom	594	744
IPR011709	DUF1605	1126	1203
IPR001650	Helicase_C	790	918
IPR007502	Helicase-assoc_dom	981	1067

External Links

No external refs found!

Seita.2G326100.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation