1. Home
  2. Species
  3. Setaria italica
  4. Sequence
  5. Seita.2G351700.1

Seita.2G351700.1


Description : regulatory protein *(THF1) of thylakoid biogenesis


Gene families : OG_42_0006595 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0006595_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.2G351700.1
Cluster HCAA Clusters: Cluster_163

Target Alias Description ECC score Gene Family Method Actions
At2g20890 No alias THF1 [Source:UniProtKB/TrEMBL;Acc:A0A178VVV5] 0.05 Orthogroups_2024-Update
Bradi1g24860 No alias photosystem II reaction center PSB29 protein 0.05 Orthogroups_2024-Update
Mp5g23000.1 No alias Psb29 protein involved in PS-II assembly 0.02 Orthogroups_2024-Update
PSME_00018215-RA No alias (at2g20890 : 154.0) Chloroplast-localized Thylakoid... 0.02 Orthogroups_2024-Update
Pp1s132_186V6 No alias chloroplast-localized ptr -binding protein1 0.02 Orthogroups_2024-Update
Pp1s172_23V6 No alias chloroplast-localized ptr -binding protein1 0.05 Orthogroups_2024-Update
Sobic.002G338100.1 No alias regulatory protein *(THF1) of thylakoid biogenesis 0.07 Orthogroups_2024-Update
Solyc07g054820 No alias Protein THYLAKOID FORMATION1, chloroplastic (AHRD V3.3... 0.02 Orthogroups_2024-Update
evm.model.contig_432.4 No alias (at2g20890 : 83.6) Chloroplast-localized Thylakoid... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0010207 photosystem II assembly IEA 16Dec
BP GO:0015979 photosynthesis IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Predicted GO
MF GO:0004427 inorganic diphosphatase activity IEP Predicted GO
MF GO:0005509 calcium ion binding IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005886 plasma membrane IEP Predicted GO
BP GO:0006801 superoxide metabolic process IEP Predicted GO
MF GO:0008171 O-methyltransferase activity IEP Predicted GO
CC GO:0009512 cytochrome b6f complex IEP Predicted GO
CC GO:0009521 photosystem IEP Predicted GO
CC GO:0009523 photosystem II IEP Predicted GO
CC GO:0009654 photosystem II oxygen evolving complex IEP Predicted GO
BP GO:0010206 photosystem II repair IEP Predicted GO
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Predicted GO
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP Predicted GO
MF GO:0016853 isomerase activity IEP Predicted GO
MF GO:0016859 cis-trans isomerase activity IEP Predicted GO
CC GO:0019898 extrinsic component of membrane IEP Predicted GO
BP GO:0030091 protein repair IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044425 membrane part IEP Predicted GO
CC GO:0044436 thylakoid part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
CC GO:0070069 cytochrome complex IEP Predicted GO
BP GO:0072593 reactive oxygen species metabolic process IEP Predicted GO
CC GO:0098796 membrane protein complex IEP Predicted GO
CC GO:1902494 catalytic complex IEP Predicted GO
CC GO:1990204 oxidoreductase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR017499 Thf1 57 262
No external refs found!