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  5. Seita.2G357900.1

Seita.2G357900.1


Description : pathogen polygalacturonase inhibitor *(PGIP)


Gene families : OG_42_0000642 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000642_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.2G357900.1
Cluster HCAA Clusters: Cluster_190

Target Alias Description ECC score Gene Family Method Actions
At2g26380 No alias Leucine-rich repeat (LRR) family protein... 0.03 Orthogroups_2024-Update
Brara.A03363.1 No alias pathogen polygalacturonase inhibitor *(PGIP) 0.04 Orthogroups_2024-Update
LOC_Os05g01444 No alias polygalacturonase inhibitor precursor, putative, expressed 0.02 Orthogroups_2024-Update
Seita.3G071400.1 No alias pathogen polygalacturonase inhibitor *(PGIP) 0.02 Orthogroups_2024-Update
Sopen10g023690 No alias Leucine rich repeat 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA 16Dec
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Type GO Term Name Evidence Source
CC GO:0000347 THO complex IEP Predicted GO
CC GO:0000445 THO complex part of transcription export complex IEP Predicted GO
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
MF GO:0005507 copper ion binding IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
InterPro domains Description Start Stop
IPR001611 Leu-rich_rpt 119 179
IPR001611 Leu-rich_rpt 260 296
IPR013210 LRR_N_plant-typ 28 66
No external refs found!